New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 501288674 (0.990)6 (0.090) 5/232 NT 7.8% intergenic (‑200/‑342) PP_5677/PP_5678 hypothetical protein/hypothetical protein
?NC_002947 = 5012897 74 (1.090)intergenic (‑211/‑331) PP_5677/PP_5678 hypothetical protein/hypothetical protein

GCGGGCCGGCTGGCGTGAACCGAGCCACCTTTCGGCGTCTCGGCCCTTCGGGCTTTCATCCTCGCGCCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5012728‑5012886
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttaaaatGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGGTGGCTC  <  NC_002947/5012897‑5012749
                                                                                                                                                                                                                                                                                                                    
GCGGGCCGGCTGGCGTGAACCGAGCCACCTTTCGGCGTCTCGGCCCTTCGGGCTTTCATCCTCGCGCCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGC                                                                                                                                                                <  2:461276/150‑1
  GGGCCGGCTGGCGTGAACCGAGCCACCTTTCGGCGTCTCGGCCCTTCGGGCTTTCATTCTCGCGCCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCC                                                                                                                                                              >  2:461915/1‑150
                                           CCCTTCGGGCTTTCATCCTCGCGCCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAA                                                                                                                                                        <  1:1527105/115‑1
                                           CCCTTCGGGCTTTCATCCTCGCGCCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAA                                                                                                                                                        >  2:1527105/1‑115
                                                                  CCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAATGGGAGTGCCCAATTTTAA                                                                                                                                     >  1:1122016/1‑111
                                                                  CCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAATGGGAGTGCCCAATTTTAA                                                                                                                                     <  2:1122016/111‑1
                                                                                                         CAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAATGGGAGTGCCCAATTTTA                                                                                                                                      >  2:885353/1‑71
                                                                                                         CAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAATGGGAGTGCCCAATTTTA                                                                                                                                      <  1:885353/71‑1
                                                                                                                         ACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAATGGGAGTGCCCAATTTTAA                                                                                                                                     <  1:1666456/56‑1
                                                                                                                         ACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAATGGGAGTGCCCAATTTTAA                                                                                                                                     >  2:1666456/1‑56
                                                                                                                                                     CCCTTAAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAA                           <  1:1490995/134‑1
                                                                                                                                                     CCCTTAAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAA                           >  2:1490995/1‑134
                                                                                                                                                      CCTTAAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAA          <  1:1718445/150‑1
                                                                                                                                                       CTTAAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAG         <  1:300712/150‑1
                                                                                                                                                        TTAAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGG        >  1:640634/1‑150
                                                                                                                                                        TTAAAATGGGAGTGCCCAATTTTAAGGGCGATCTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGG        <  1:372980/150‑1
                                                                                                                                                         TAAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGca       <  1:833732/150‑3
                                                                                                                                                          AAAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGGTG      <  2:676990/150‑1
                                                                                                                                                           AAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGGTGG     >  2:434030/1‑150
                                                                                                                                                           AAATGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGGTGG     <  1:300964/150‑1
                                                                                                                                                              TGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGGTGGCTC  >  1:573581/1‑150
                                                                                                                                                                                                                                                                                                                    
GCGGGCCGGCTGGCGTGAACCGAGCCACCTTTCGGCGTCTCGGCCCTTCGGGCTTTCATCCTCGCGCCTGCGCGCTCTGCTTGCCTCGCATCCATGTCAGCATATCAGCTTCAGGAGTTCGACCTGGGCGATTGCTCTCTAAGAAATCGCCCTTAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5012728‑5012886
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttaaaatGGGAGTGCCCAATTTTAAGGGCGATTTCTTAGAGAGCAATCGCCCAGGTCGAACTCCTGAAGCTGATATGCTGACATGGATGCGAGGCAAGCAGAGCGCGCAGGCGCGAGGATGAAAGCCCGAAGGGCCGAGACGCCGAAAGGTGGCTC  <  NC_002947/5012897‑5012749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.