| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5164490 | 70 (0.940) | 5 (0.070) | 5/244 | NT | 7.3% | coding (3438/3906 nt) | hrpA | ATP‑dependent helicase HrpA |
| ? | NC_002947 | = 5164525 | 59 (0.820) | coding (3403/3906 nt) | hrpA | ATP‑dependent helicase HrpA | |||||
CGGGTACACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5164340‑5164490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTGA < NC_002947/5164525‑5164378 CGGGTACACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGC < 1:378680/150‑1CGGGTACACCACGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGC < 2:773398/150‑1 CGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCCAGCCGCCGCGCTGGCTGAACGCAAGCGCGGCAG < 1:473838/150‑1 TCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAG > 1:1182183/1‑128 TCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAG < 2:1182183/128‑1 CCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGA > 1:1252637/1‑121 CCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGA < 2:1252637/121‑1 CCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTGA > 2:1587746/1‑150 CCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATG > 1:1259316/1‑96 CCTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATG < 2:1259316/96‑1 CGGGTACACCAGGTTGCCTAGCTGCTGCTTGATGTCGTTCAGTGCCACCGCTTGGCTCAGGTCGATCTTGCCCTTGAAGCGTTTCTGCAGACCATGCCACAGCTTCAGCACTTCCAGGGTCTGCCTTGCCAGGCGCTCGGCATGCTCGGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5164340‑5164490‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccTTG‑‑GCCGCGCTGGCTGAACGCAAGCGCGGCAGCTGGGCCGAGCATGCCGAGCGCCTGGCAAGGCAGACCCTGGAAGTGCTGAAGCTGTGGCATGGTCTGCAGAAACGCTTCAAGGGCAAGATCGACCTGAGCCAAGCGGTGGCACTGA < NC_002947/5164525‑5164378 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |