New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5680649 =	86 (1.150)	4 (0.060)	4/244	NT	5.3%	coding (653/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	5680698 =	59 (0.820)					coding (702/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase

GCCACTGGCATGGCATCTGGCACCTGTTCGTCATCGCTGGCAGCCTGATGCACTTCGTGGCGGTGTCGCTCTACGTGCGCTAGTTAAAAGTCGCCCCACAACTGCTGTGCCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5680799‑5680649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAG  >  NC_002947/5680698‑5680843                                                                                                                                                                                                                                                                                                           GCCACTGGCATGGCATCTGGCACCTGTTCGTCATCGCTGGCAGCCTGATGCACTTCGTGGCGGTGTCGCTCTACGTGCGCTAGTTAAAAGTCGCCCCACAACTGCTGTGCCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGC                                                                                                                                                     >  2:823758/1‑150                                                                                                       TGCTGTGCCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCT                                                                                       <  1:1347717/110‑1                                                                                                       TGCTGTGCCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCT                                                                                       >  2:1347717/1‑110                                                                                                          TGTGCCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCA                                                        >  1:1336607/1‑138                                                                                                          TGTGCCACCGACAGCGCCACCACAGGCGCGGTCTCGGTGCGCAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCA                                                        <  2:1336607/138‑1                                                                                                                                                    AGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGATCGACACCGCCACGAAGTGCATCAGGCTGCCAGCGATGACGCACAGGTGCCAGATGCCATGCCTGAATCTTAAACTGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAG  <  1:799363/150‑1                                                                                                                                                    AGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAG  <  2:686151/150‑1                                                                                                                                                                                                                                                                                                           GCCACTGGCATGGCATCTGGCACCTGTTCGTCATCGCTGGCAGCCTGATGCACTTCGTGGCGGTGTCGCTCTACGTGCGCTAGTTAAAAGTCGCCCCACAACTGCTGTGCCACCGACAGCGCCACCACCGGCGCGGTCTCGGTGCGCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5680799‑5680649 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCGCCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAG  >  NC_002947/5680698‑5680843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.