New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5680649 =	86 (1.150)	4 (0.060)	4/244	NT	5.3%	coding (653/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase
	?	NC_002947	5680698 =	59 (0.820)					coding (702/720 nt)	rsmE	16S rRNA (uracil(1498)‑N(3))‑methyltransferase

CCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAG  >  NC_002947/5680551‑5680843                                                                                                                                                     |                                                                                                                                                   ccTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGtt                                                                                                                                                  >  1:1800336/1‑150 (MQ=255)  cTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTtg                                                                                                                                                 >  2:706478/1‑150 (MQ=255)   tGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTtgt                                                                                                                                                <  2:1569370/150‑1 (MQ=255)      ccTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTggg                                                                                                                                             <  1:979463/150‑1 (MQ=255)        ttCGGGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGAGGGTCGAGCAGGCCAAAGCCGCCGACTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTgggg                                                                                                                                            <  1:1757305/150‑1 (MQ=255)           gTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGAc                                                                                                                                        <  1:182176/150‑1 (MQ=255)              aTCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGT‑GGGCGACtttt                                                                                                                                    <  1:718206/150‑1 (MQ=255)                cGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCAGGCAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTa                                                                                                                                   <  1:706478/150‑1 (MQ=255)                 ggCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTaa                                                                                                                                  <  1:1655680/150‑1 (MQ=255)                 ggCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTaa                                                                                                                                  <  2:699706/150‑1 (MQ=255)                   ccccGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAAcc                                                                                                                                >  2:36518/1‑149 (MQ=255)                         aGGCGGCCTTAGCGAAGCCGA‑GGTCGACAAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCa                                                                                                                          <  2:310680/150‑1 (MQ=255)                               ccTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGGCGAGGTCGTGGCCGTAGGTGGTACAGCAGTTGTGGGGCGACTTTTAACAAGCGGACGTaga                                                                                                                    <  2:1005625/150‑1 (MQ=255)                               ccTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTaga                                                                                                                    <  1:963130/150‑1 (MQ=255)                                cTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAg                                                                                                                              >  2:502618/1‑139 (MQ=255)                                cTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAg                                                                                                                              <  1:502618/139‑1 (MQ=255)                                cTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTagag                                                                                                                   >  2:1041208/1‑150 (MQ=255)                                      gAAGCCGA‑GGGCGAGCAGGCCAAAGCCGCCCGATTACACCAAGCACGAGTTGTTTCGGTCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGGGACTTTTAACTAGCGCACGTAGAGAGacac                                                                                                             >  1:516131/1‑150 (MQ=255)                                            gA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAgcgc                                                                                                                           >  2:465855/1‑130 (MQ=255)                                            gA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAgcgc                                                                                                                           <  1:465855/130‑1 (MQ=255)                                                gTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGaa                                                                                                   <  2:417752/150‑1 (MQ=255)                                                  cGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGt                                                                                                 <  1:1320515/150‑1 (MQ=255)                                                      cAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCAt                                                                                             <  1:1643621/150‑1 (MQ=255)                                                         gCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGc                                                                                                                                           >  1:1739517/1‑102 (MQ=255)                                                         gCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGc                                                                                                                                           <  2:1739517/102‑1 (MQ=255)                                                           cAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTACGCGACGTGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGGCTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGc                                                                                        >  1:987870/1‑150 (MQ=255)                                                            aaaGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCt                                                                                       <  1:1305633/150‑1 (MQ=255)                                                                  gccgGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGc                                                                                 >  1:736918/1‑150 (MQ=255)                                                                   ccgGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCCCCGAGACCGAGCCGGAGGTAGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CGACGAAGTGCATCAGGCTGCCAGCg                                                                                >  2:544515/1‑150 (MQ=255)                                                                       cTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTaga                                                                                                                    >  1:918239/1‑111 (MQ=255)                                                                       cTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTaga                                                                                                                    <  2:918239/111‑1 (MQ=255)                                                                        ttCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCATAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGAc                                                                           >  1:1174205/1‑150 (MQ=255)                                                                        ttCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTAGTGGCGCTATCGGTGGCACAGCAGTTGTAGGGCGACTTTTAACTAGCGCACGTAGAGCGACCCCG‑CCACGAAGTGCATCAGACTGCCAGCGAAGAc                                                                           >  2:845342/1‑150 (MQ=255)                                                                        ttCCACGCAGCACGACTTGGTCCGGGCGTTCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGATGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACCCCG‑CCACCAAGTGCATCAGGCTGCCAGCgacgac                                                                           >  2:169263/1‑150 (MQ=255)                                                                          ccACGCAGGACGCATTGGCCCGCGCGTGCTGCGCACCGAGACCGACACGTTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGa                                                                         <  1:1646199/150‑1 (MQ=255)                                                                           cACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTa                                                                                                                      <  1:163750/105‑1 (MQ=255)                                                                           cACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTa                                                                                                                      >  2:163750/1‑105 (MQ=255)                                                                            aCGCAGCACGCCTTGGCCCGCGCGTGCTTTGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAAc                                                                       >  1:989843/1‑150 (MQ=255)                                                                            aCGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAAc                                                                       >  1:654375/1‑150 (MQ=255)                                                                              gcagcaCGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAg                                                                     <  2:1629580/150‑1 (MQ=255)                                                                                  caCGCCTTGGCCCTCGCTGGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGc                                                                 <  1:1462381/150‑1 (MQ=255)                                                                                     gCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAg                                                              >  2:1569060/1‑150 (MQ=255)                                                                                       cTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGat                                                            >  2:573661/1‑150 (MQ=255)                                                                                          ggCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGatgcc                                                         <  2:138337/150‑1 (MQ=255)                                                                                           gCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGatgcca                                                        <  2:736918/150‑1 (MQ=255)                                                                                            cccGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGAGGCAATAACGGTAGCAGAGTATTTGTGGGTCGACGTTGAACTAGCGCACGTAGAGCGACACCA‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGCACAGGTGCCAGatgccat                                                       >  1:1471215/1‑150 (MQ=255)                                                                                             ccGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGatgccatg                                                      <  1:597644/150‑1 (MQ=255)                                                                                                    tgctgtgccaccgacagcgccaccaccggcgcggtctcggtgcgcagcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCt                                                                                       >  2:1347717‑M2/50‑110 (MQ=255)                                                                                                    tgctgtgccaccgacagcgccaccaccggcgcggtctcggtgcgcagcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCt                                                                                       <  1:1347717‑M2/61‑1 (MQ=255)                                                                                                     GCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGc                                              >  2:823758‑M1/1‑150 (MQ=255)                                                                                                       tgtgccaccgacagcgccaccaccggcgcggtctcggtgcgcagcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGatgcca                                                        >  1:1336607‑M2/47‑138 (MQ=255)                                                                                                       tgtgccaccgacagcgccaccacaggcgcggtctcggtgcgcagcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGatgcca                                                        <  2:1336607‑M2/92‑1 (MQ=255)                                                                                                               gagaCCGCGCCGGTGGTGGCGCTGTTGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCt                                    <  1:1050816/150‑1 (MQ=255)                                                                                                               gagaCCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCt                                    <  2:1286889/150‑1 (MQ=255)                                                                                                               gagaCCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCt                                    <  1:785603/150‑1 (MQ=255)                                                                                                                 gaCCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGaaa                                         <  2:1660864/143‑1 (MQ=255)                                                                                                                 gaCCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGaaa                                         >  1:1660864/1‑143 (MQ=255)                                                                                                                 gaCCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGt                                  >  1:1134006/1‑150 (MQ=255)                                                                                                                  aCCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTc                                 >  2:1212285/1‑150 (MQ=255)                                                                                                                     gcgcCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGc                                                                                               >  2:1423648/1‑85 (MQ=255)                                                                                                                     gcgcCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGc                                                                                               <  1:1423648/85‑1 (MQ=255)                                                                                                                       gcCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAgg                            <  2:1134006/150‑1 (MQ=255)                                                                                                                               tggCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGaaa                    >  2:634331/1‑150 (MQ=255)                                                                                                                                   gcTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCCAAGAAAatga                <  2:1459874/150‑1 (MQ=255)                                                                                                                                    cTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAatgat               <  1:1576775/150‑1 (MQ=255)                                                                                                                                         ggTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGa          <  1:1212285/150‑1 (MQ=255)                                                                                                                                         ggTGGCACAGCAGTTGTGGGACGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGa          >  2:1717547/1‑150 (MQ=255)                                                                                                                                              cacaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACTTCGTAGAATAAG‑GCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGgtg     <  2:989843/150‑1 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCt                                    <  1:935135/118‑1 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCt                                    >  2:935135/1‑118 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAgg                            <  1:1750511/126‑1 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAgg                            >  2:1750511/1‑126 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGgtgt    >  1:256057/1‑150 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGgtgt    <  1:1041208/150‑1 (MQ=255)                                                                                                                                               acaGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGgtgt    >  2:965395/1‑150 (MQ=255)                                                                                                                                                 agcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGATCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGCACAGGTGCCAGATGCCATGCCTGAATCTTAAACTGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAg  <  1:799363‑M2/146‑1 (MQ=255)                                                                                                                                                 agcaGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAg  <  2:686151‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CCTGGCCTTCGTGATCGGCCCCGAAGGCGGCCTTAGCGAAGCCGA‑GGTCGAGCAGGCCAAAGCCGCCGGCTTCCACGCAGCACGCCTTGGCCCGCGCGTGCTGCGCACCGAGACCGCGCCGGTGGTGGCGCTGTCGGTGGCACAGCAGTTGTGGGGCGACTTTTAACTAGCGCACGTAGAGCGACACCG‑CCACGAAGTGCATCAGGCTGCCAGCGATGACGAACAGGTGCCAGATGCCATGCCAGTGGCGGAAACGGCTGTCGAAGGCGAAGAAAATGATGCCGACGGTGTAG  >  NC_002947/5680551‑5680843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.