New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5812081	82 (1.100)	3 (0.040)	3/244	NT	3.6%	coding (1353/2220 nt)	priA	primosome assembly protein
	?	NC_002947	= 5812115	81 (1.130)					coding (1387/2220 nt)	priA	primosome assembly protein
Rejected: Frequency below/above cutoff threshold.

TGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5811930‑5812081 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcCGGAGCGCTGGTGCACGGTCATGCGCGCATCGCAGCGTGGGCATTCGGACAGCCAGCCGCAATCGTGGCACAGCAAGGTTGGGGCAAAGCCGCGGCGGTTGAGGAACACCAGCACTTGTTGGCCAGCCTCCAGGGTCTGTCGGATAGC  <  NC_002947/5812115‑5811968                                                                                                                                                                                                                                                                                                              TGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTGCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGATGTCCGATTGCCCAC                                                                                                                                                        >  2:526339/1‑150                                           TCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCCGGAGCGCTGGTGCACGGTCATGCGCGCATCGCAGCGTGG                                                                                                              <  2:1275672/150‑1                                                                                     TCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCCGGAGCGCTGGTGCACGGTCATGCGCGCATC                                                                                                                       <  1:923579/99‑1                                                                                     TCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGCCGGAGCGCTGGTGCACGGTCATGCGCGCATC                                                                                                                       >  2:923579/1‑99                                                                                                                                                       GCCGGAGCGCTGGTGCACGGTTATACGCGCATCGCAGCGTGGGCATTCGGACAGCCAGCCGCAGTCGTGGCACAGCAAGGTTGGGGCAAAGCCGCGGCGGTTGAGGAACACCAGCACTTGTTGGCCAGCCTCCAGGGTCTGTCGGATAGC  <  2:962401/150‑1                                                                                                                                                       GCCGGAGCGCTGGTGCACGGTCATGCGCGCATCGCAGCGTGGGCATTCGGACAGCCAGCCGCAATCGTGGCACAGCAAGGTTGGGGCAAAGCCGCGGCGGTTGAGGAACACCAGCACTTGTTGGCCAGCCTCCAGGGTCTGTCGGATAGC  >  2:608738/1‑150                                                                                                                                                       GCCGGAGCGCTGGTGCACGGTCATGCGCGCATCGCAGCGTGGGCATTCGGACAGCCAGCCGCAATCGTGGCACAGCAAGGTTGGGGCAAAGCCGCGGCGGTTGAGGAACACCAGCACTTGTTG                             >  1:1637794/1‑123                                                                                                                                                       GCCGGAGCGCTGGTGCACGGTCATGCGCGCATCGCAGCGTGGGCATTCGGACAGCCAGCCGCAATCGTGGCACAGCAAGGTTGGGGCAAAGCCGCGGCGGTTGAGGAACACCAGCACTTGTTG                             <  2:1637794/123‑1                                                                                                                                                                                                                                                                                                              TGCCACTGGACAGCGGCATCAGTGGCCCGCTGCAGCAGGCTATCCGACAGACCCTGGAGGCTGGCCAACAAGTGCTGGTGTTCCTCAACCGCCGCGGCTTTGCCCCAACCTTGCTGTGCCACGATTGCGGCTGGCTGTCCGAATGCCCACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5811930‑5812081 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cacgcCGGAGCGCTGGTGCACGGTCATGCGCGCATCGCAGCGTGGGCATTCGGACAGCCAGCCGCAATCGTGGCACAGCAAGGTTGGGGCAAAGCCGCGGCGGTTGAGGAACACCAGCACTTGTTGGCCAGCCTCCAGGGTCTGTCGGATAGC  <  NC_002947/5812115‑5811968

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.