| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6128496 = | 47 (0.630) | 4 (0.060) | 4/244 | NT | 8.5% | intergenic (‑556/‑366) | PP_5375/PP_5376 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 6128517 = | 41 (0.570) | intergenic (‑577/‑345) | PP_5375/PP_5376 | LysR family transcriptional regulator/hypothetical protein | |||||
GAACTGATTCAATCAAATCCACCGCAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCCCATGAAATGAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6128649‑6128496‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCGG > NC_002947/6128517‑6128665 GAACTGATTCAATCAAATCCACCGCAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCCCATGAAATGAG > 2:397733/1‑150GAACTGATTCAATCAAATCCACCGCAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCCCAGGAAATGAG > 1:507878/1‑150GAACTGATTCAATCAAATCCACCGCAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCCCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCGTTTGCGACAGATTTCCATTTTCTCCCACGGAGCCCGCAGGCCCCATGAAATGAG > 2:753092/1‑150 ACTGATTCAATCAAATCCACCGCAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCACGCCCCATGAAATGAGac > 2:583238/1‑148 CAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAA < 2:160956/150‑1 AGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCCCATGAAATGAG < 1:501237/123‑1 AGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCCCATGAAATGAG > 2:501237/1‑123 CGCAGGCCCCATGAAATGAGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAG < 1:748353/94‑1 CGCAGGCCCCATGAAATGAGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAG > 2:748353/1‑94 AGGCCCCATGAAATGAGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCA > 2:822304/1‑150 CCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCC < 2:1576735/150‑1 TGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCGG > 1:1811511/1‑150 TGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCGG > 1:473829/1‑150 GAACTGATTCAATCAAATCCACCGCAAAGCCGCGTCATTACTGGCGGCGACAGTTTTAATTCTCTAAAGCGATCGCCTGAAGCGGTATTTCGTGCTTTTGCGACAGTTTTGCATTTTCTCCAAGGGAGCCCGCAGGCCCCATGAAATGAGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/6128649‑6128496‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcctGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCGG > NC_002947/6128517‑6128665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |