New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6128496 =	47 (0.630)	4 (0.060)	4/244	NT	8.5%	intergenic (‑556/‑366)	PP_5375/PP_5376	LysR family transcriptional regulator/hypothetical protein
	?	NC_002947	6128517 =	41 (0.570)					intergenic (‑577/‑345)	PP_5375/PP_5376	LysR family transcriptional regulator/hypothetical protein

GGAGACGGGACGCGAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAAT  >  NC_002947/6128347‑6128643                                                                                                                                                      |                                                                                                                                                    ccgggtgggtttcgtcgaactgattcaatcaaatccaccgcaaagccgcgtcattactggcggcgacagttttaattctctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgca                                                                                                                                                     >  1:473829‑M1/150‑150 (MQ=255) ccgggtgggtttcgtcgaactgattcaatcaaatccaccgcaaagccgcgtcattactggcggcgacagttttaattctctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgca                                                                                                                                                     >  1:1811511‑M1/150‑150 (MQ=255)   gggtgggtttcgtcgaactgattcaatcaaatccaccgcaaagccgcgtcattactggcggcgacagttttaattctctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcAgg                                                                                                                                                   <  2:1576735‑M1/3‑1 (MQ=255)    gaCGGGACGCGAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGc                                                                                                                                                  <  1:522187/150‑1 (MQ=255)       gggACGCGAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTc                                                                                                                                               >  2:1861057/1‑150 (MQ=255)         gACGCGAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCAt                                                                                                                                             <  1:1507892/150‑1 (MQ=255)         gACGCGAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCAt                                                                                                                                             >  2:1837265/1‑150 (MQ=255)            gcgAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTc                                                                                                                                          >  1:1100981/1‑150 (MQ=255)              gAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACAAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCAt                                                                                                                                        <  2:1505975/150‑1 (MQ=255)                 ggAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCTCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATggg                                                                                                                                     <  1:1478213/150‑1 (MQ=255)                  gagaCGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGACTTACACCTGTCGCAACGAGGCCTCATTTCATgggg                                                                                                                                    <  2:1553213/150‑1 (MQ=255)                  gagaCGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATgggg                                                                                                                                    <  2:1100981/150‑1 (MQ=255)                     tgattcaatcaaatccaccgcaaagccgcgtcattactggcggcgacagttttaattctctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcAGGCCTCATTTCATGGGGCCt                                                                                                                                 >  2:822304‑M1/130‑150 (MQ=255)                             aaCCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTc                                                                                                                         >  1:650856/1‑150 (MQ=255)                                   ccGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTgg                                                                                                                   <  1:813341/150‑1 (MQ=255)                                     gtagaggggAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGgag                                                                                                                 >  2:163734/7‑150 (MQ=255)                                      aTGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGgaga                                                                                                                >  1:1576735/1‑150 (MQ=255)                                        gAAGGGGAGCTAGCGCTTCCGCTCTACCGGCGACAGCTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGaaa                                                                                                              >  2:504193/1‑150 (MQ=255)                                          aGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAAt                                                                                                            <  1:1837265/150‑1 (MQ=255)                                          aGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGGTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAAt                                                                                                            <  1:1924726/150‑1 (MQ=255)                                            ggAAACGAGCGCTTCCCCTCTACCGACGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGc                                                                                                          >  1:448865/1‑150 (MQ=255)                                                 cGAGCGGTTCCGCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATACAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAAGGCAAAAc                                                                                                     >  2:70584/1‑150 (MQ=255)                                                  gAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACt                                                                                                    >  1:644613/1‑150 (MQ=255)                                                     cgcTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTc                                                                                                 <  1:1903616/150‑1 (MQ=255)                                                     cgcTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCCTGGAGAAAATGCAAAACTGTc                                                                                                 <  1:1903800/150‑1 (MQ=255)                                                       cTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGc                                                                                               >  2:197141/1‑150 (MQ=255)                                                               ctACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGCGCTTTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCAc                                                                                       <  1:1861057/150‑1 (MQ=255)                                                               ctACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCAc                                                                                       <  2:1092779/150‑1 (MQ=255)                                                               ctACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCAc                                                                                       <  2:650856/150‑1 (MQ=255)                                                                  ccGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGc                                                                                                                               <  1:1904363/107‑1 (MQ=255)                                                                  ccGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGc                                                                                                                               >  2:1904363/1‑107 (MQ=255)                                                                      cGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATAc                                                                                <  2:164330/150‑1 (MQ=255)                                                                                ctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcAGGCCTCATTTCATGGGGCCTGCg                                                                                                                              <  1:748353‑M1/24‑1 (MQ=255)                                                                                ctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcAGGCCTCATTTCATGGGGCCTGCg                                                                                                                              >  2:748353‑M1/71‑94 (MQ=255)                                                                                aaTTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGCGGCAAAATCTCATGGGGCCTGTGGTCTCCCTTTTAGAAATTGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGc                                                                      <  1:1672348/150‑1 (MQ=255)                                                                                 aTTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCg                                                                     >  1:221437/1‑150 (MQ=255)                                                                                           gacTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTag                                                           <  1:163734/150‑1 (MQ=255)                                                                                                ttttAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAAt                                                      >  2:573707/1‑150 (MQ=255)                                                                                                       tCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACt                                               <  1:1158104/150‑1 (MQ=255)                                                                                                            gAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTcgc                                          >  2:380783/1‑150 (MQ=255)                                                                                                             aaaCCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTcgcc                                         >  2:1641777/1‑150 (MQ=255)                                                                                                              aaCCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCtt                                                                           <  2:183622/115‑1 (MQ=255)                                                                                                              aaCCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCtt                                                                           >  1:183622/1‑115 (MQ=255)                                                                                                                         gAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGAc                             >  1:921479/1‑150 (MQ=255)                                                                                                                           aTTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGAcgc                           <  1:1856135/150‑1 (MQ=255)                                                                                                                             ttAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCgg                         >  2:308179/1‑150 (MQ=255)                                                                                                                                gagaATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTaa                                 >  2:1207470/1‑139 (MQ=255)                                                                                                                                gagaATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTaa                                 <  1:1207470/139‑1 (MQ=255)                                                                                                                                  ttttctccaagggagcccgcAGGCCCCATGAAATGAGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTg                    <  2:160956‑M1/130‑1 (MQ=255)                                                                                                                                       aaaaCTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTg               <  2:921479/150‑1 (MQ=255)                                                                                                                                             gTCGCAACGAGGCCTCATTTCATGGGGCCTGAGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCtt                                                              >  2:936186/1‑97 (MQ=255)                                                                                                                                             gTCGCAACGAGGCCTCATTTCATGGGGCCTGAGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCtt                                                              <  1:936186/97‑1 (MQ=255)                                                                                                                                              tCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATttga        >  1:1895957/1‑150 (MQ=255)                                                                                                                                               cGCAACGAGGCCTCATTTCATGGGGCCTGCGGACGGCGGTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATttgat       <  2:151387/150‑1 (MQ=255)                                                                                                                                                gCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATttgatt      >  2:1395711/1‑150 (MQ=255)                                                                                                                                                    agAGGCCTCATTTCATGGGGCCTGCGGGCTCACTCGGAGAAAATGCAAACCTGTAAGAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAAt  <  2:448865/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    GGAGACGGGACGCGAGGGAGACGGTTGAAACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAAT  >  NC_002947/6128347‑6128643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.