| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 6128496 = | 47 (0.630) | 4 (0.060) | 4/244 | NT | 8.5% | intergenic (‑556/‑366) | PP_5375/PP_5376 | LysR family transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 6128517 = | 41 (0.570) | intergenic (‑577/‑345) | PP_5375/PP_5376 | LysR family transcriptional regulator/hypothetical protein | |||||
AACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCGG > NC_002947/6128375‑6128665 | aaCCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTc > 1:650856/1‑150 (MQ=255) ccGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTgg < 1:813341/150‑1 (MQ=255) gtagaggggAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGgag > 2:163734/7‑150 (MQ=255) aTGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGgaga > 1:1576735/1‑150 (MQ=255) gAAGGGGAGCTAGCGCTTCCGCTCTACCGGCGACAGCTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGaaa > 2:504193/1‑150 (MQ=255) caaagccgcgtcattactggcggcgacagttttaattctctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcaggcctcatttcatggggcctGCGGGCTCCCTTGGAGaaaa < 2:160956‑M2/20‑1 (MQ=255) aGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAAt < 1:1837265/150‑1 (MQ=255) aGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGGTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAAt < 1:1924726/150‑1 (MQ=255) ggAAACGAGCGCTTCCCCTCTACCGACGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGc > 1:448865/1‑150 (MQ=255) cGAGCGGTTCCGCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATACAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAAGGCAAAAc > 2:70584/1‑150 (MQ=255) gAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACt > 1:644613/1‑150 (MQ=255) cgcTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTc < 1:1903616/150‑1 (MQ=255) cgcTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCCTGGAGAAAATGCAAAACTGTc < 1:1903800/150‑1 (MQ=255) cTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGc > 2:197141/1‑150 (MQ=255) ctACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGCGCTTTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCAc < 1:1861057/150‑1 (MQ=255) ctACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCAc < 2:1092779/150‑1 (MQ=255) ctACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCAc < 2:650856/150‑1 (MQ=255) ccGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGc < 1:1904363/107‑1 (MQ=255) ccGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGc > 2:1904363/1‑107 (MQ=255) cGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATAc < 2:164330/150‑1 (MQ=255) ctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcAGGCCTCATTTCATGGGGCCTGCg > 2:748353‑M1/71‑94 (MQ=255) ctaaagcgatcgcctgaagcggtatttcgtgcttttgcgacagttttgcattttctccaagggagcccgcAGGCCTCATTTCATGGGGCCTGCg < 1:748353‑M1/24‑1 (MQ=255) aaTTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGCGGCAAAATCTCATGGGGCCTGTGGTCTCCCTTTTAGAAATTGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGc < 1:1672348/150‑1 (MQ=255) aTTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCg > 1:221437/1‑150 (MQ=255) gacTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTag < 1:163734/150‑1 (MQ=255) ttttAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAAt > 2:573707/1‑150 (MQ=255) tCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACt < 1:1158104/150‑1 (MQ=255) gAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTcgc > 2:380783/1‑150 (MQ=255) aaaCCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTcgcc > 2:1641777/1‑150 (MQ=255) aaCCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCtt > 1:183622/1‑115 (MQ=255) aaCCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCtt < 2:183622/115‑1 (MQ=255) gAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGAc > 1:921479/1‑150 (MQ=255) aTTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGAcgc < 1:1856135/150‑1 (MQ=255) ttAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCgg > 2:308179/1‑150 (MQ=255) gagaATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTaa < 1:1207470/139‑1 (MQ=255) gagaATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTaa > 2:1207470/1‑139 (MQ=255) ttttctccaagggagcccgcAGGCCCCATGAAATGAGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTg < 2:160956‑M1/130‑1 (MQ=255) aaaaCTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTg < 2:921479/150‑1 (MQ=255) gTCGCAACGAGGCCTCATTTCATGGGGCCTGAGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCtt > 2:936186/1‑97 (MQ=255) gTCGCAACGAGGCCTCATTTCATGGGGCCTGAGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCtt < 1:936186/97‑1 (MQ=255) tCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATttga > 1:1895957/1‑150 (MQ=255) cGCAACGAGGCCTCATTTCATGGGGCCTGCGGACGGCGGTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATttgat < 2:151387/150‑1 (MQ=255) gCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATttgatt > 2:1395711/1‑150 (MQ=255) cgcaggccccatgaaatgaggcctGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTag < 1:748353‑M2/70‑1 (MQ=255) cgcaggccccatgaaatgaggcctGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTag > 2:748353‑M2/25‑94 (MQ=255) agAGGCCTCATTTCATGGGGCCTGCGGGCTCACTCGGAGAAAATGCAAACCTGTAAGAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAAt < 2:448865/149‑1 (MQ=255) aggccccatgaaatgaggcctGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCa > 2:822304‑M2/22‑150 (MQ=255) gtCTCATTTCATGGGGCGTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGt > 2:583238‑M1/3‑150 (MQ=255) CTCATTTCCTGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTc > 1:507878‑M1/1‑150 (MQ=255) CTCATTTCATGGGGCCTGCGGGCTCCGTGGGAGAAAATGGAAATCTGTCGCAAACGCACGAAATACCGCTTCAGGCGATCGCTTTAGGGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTc > 2:753092‑M1/1‑150 (MQ=255) CTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCt > 2:501237‑M1/1‑123 (MQ=255) CTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCt < 1:501237‑M1/123‑1 (MQ=255) CTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTc > 2:397733‑M1/1‑150 (MQ=255) tCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACg < 1:882782/59‑1 (MQ=255) tCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACg > 2:882782/1‑59 (MQ=255) tCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTcg > 2:1565353/1‑150 (MQ=255) cATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGaaa < 1:380783/150‑1 (MQ=255) cctGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAacccaccc < 2:1576735‑M2/147‑1 (MQ=255) tGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCgg > 1:473829‑M2/2‑150 (MQ=255) tGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCgg > 1:1811511‑M2/2‑150 (MQ=255) | AACCGTCCGATGAAGGGAAACGAGCGCTTCCCCTCTACCGGCGACAGTTTTAATTGTTCGACGACTGTTTTAATTCAACGAAACCAAGTTGTGAATTTAGAGAATTAAAACTGTCGCAACGAGGCCTCATTTCATGGGGCCTGCGGGCTCCCTTGGAGAAAATGCAAAACTGTCGCAAAAGCACGAAATACCGCTTCAGGCGATCGCTTTAGAGAATTAAAACTGTCGCCGCCAGTAATGACGCGGCTTTGCGGTGGATTTGATTGAATCAGTTCGACGAAACCCACCCGG > NC_002947/6128375‑6128665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |