New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 337811	35 (0.530)	19 (0.360)	22/210	2.0	39.7%	intergenic (‑58/+71)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease
	?	NC_002947	= 337839	30 (0.570)					intergenic (‑86/+43)	PP_0279/PP_0280	hypothetical protein/amino acid ABC transporter permease

AGCTGCAGGCTGGTGAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/337641‑337811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcacgcccgctcccacaggtGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGACCAGTTC  <  NC_002947/337839‑337694                                                                                                                                                                                                                                                                                                                                AGCTGCAGGCTGGTGAAGGGGCGCGGTTTCCACAGCTTCTTCGGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCG                                                                                                                                                                          <  2:1378122/150‑1  GCTGCAGGCTGGTGAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTGGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGG                                                                                                                                                                         <  2:776476/150‑1  GCTGCAGGCTGGTGAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGG                                                                                                                                                                         >  2:215769/1‑150    TGCAGGCTGGTGAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCGAGGATGTGTGGTGGTGTTGAGGGCATCTTCGCGGGC                                                                                                                                                                       >  1:715193/1‑150              TGAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTC                                                                                                                                                             <  1:338155/150‑1               GAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCC                                                                                                                                                            >  2:425466/1‑150                    GGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGACGGTCTCTTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                       <  1:1133359/150‑1                             TCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGACTCTTCGCGGGCACGTCCGCTCCCACAGGTGTAGCGC                                                                                                                                              >  2:489809/1‑150                                ACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAA                                                                                                                                           >  2:913608/1‑150                                        TGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAAT                                                                                                                                   <  1:489809/150‑1                                              TCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCGTGCCCGCgaagag                                                                                                                                                         <  1:1525868/122‑7                                              TCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCGTGCCCGCgaagag                                                                                                                                                         >  2:1525868/1‑116                                              TCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGGGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCG                                                                                                                            >  2:339905/1‑150                                                GATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCT                                                                                                                          >  1:219680/1‑150                                                GATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCT                                                                                                                          >  1:56812/1‑150                                                GATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCC                                                                                                                                                                 >  1:264227/1‑112                                                GATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCC                                                                                                                                                                 <  2:264227/112‑1                                                   CAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATA                                                                                                                       <  2:219680/150‑1                                                     GGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGGGGTTGGGCATGGCAAGGGTGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCACCCACAGGTGTAGCGCCAACCTTGGATG‑TGGGGCTATAgc                                                                                                                     >  1:599932/1‑148                                                            GTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTTGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTC                                                                                                                                                                             >  2:993659/1‑88                                                            GTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTTGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTC                                                                                                                                                                             <  1:993659/88‑1                                                                                   TTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTG                                                                                                                 >  2:491371/1‑124                                                                                   TTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                       <  1:748980/87‑1                                                                                   TTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAG                                                                                                                                                       >  2:748980/1‑87                                                                                            GGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  >  1:1216786/1‑114                                                                                            GGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  <  2:1216786/114‑1                                                                                               TGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGC                                                                                                                           >  1:802934/1‑102                                                                                               TGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCGCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGC                                                                                                                           <  2:802934/102‑1                                                                                                          TTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  >  1:1078434/1‑100                                                                                                          TTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  <  2:1078434/100‑1                                                                                                                                GTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  >  1:148581/1‑78                                                                                                                                GTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  <  2:148581/78‑1                                                                                                                                             CCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGC                                                                                                        <  1:168846/75‑1                                                                                                                                             CCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGC                                                                                                        >  2:168846/1‑75                                                                                                                                                    GCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCT                      >  2:1026970/1‑150                                                                                                                                                              CCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCT            >  1:1565652/1‑150                                                                                                                                                              CCGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCT            >  1:913608/1‑150                                                                                                                                                               CGCTCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTC           <  2:1565652/150‑1                                                                                                                                                                GCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACAC                                                                       <  1:1247444/89‑1                                                                                                                                                                GCTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACAC                                                                       >  2:1247444/1‑89                                                                                                                                                                 CTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGA         >  1:319590/1‑150                                                                                                                                                                 CTCCCACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGA         >  1:215769/1‑150                                                                                                                                                                  TCCCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGAGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGAC        >  1:1632959/1‑150                                                                                                                                                                    CCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGACCA      >  2:56812/1‑150                                                                                                                                                                    CCACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGACCA      >  2:1303665/1‑150                                                                                                                                                                     CACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACA                                           >  1:890143/1‑112                                                                                                                                                                     CACAGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACA                                           <  2:890143/112‑1                                                                                                                                                                     CACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGACCAG     >  1:339905/1‑150                                                                                                                                                                     CACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAA                               >  1:491371/1‑124                                                                                                                                                                      ACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGA         <  2:1347114/145‑1                                                                                                                                                                      ACAGGTATAGCGCC‑ACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGA         >  1:1347114/1‑145                                                                                                                                                                        AGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGACCAGTTC  >  2:1460710/1‑150                                                                                                                                                                        AGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  <  1:1073909/38‑1                                                                                                                                                                        AGGTGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGT                                                                                                                  >  2:1073909/1‑38                                                                                                                                                                                                                                                                                                                                AGCTGCAGGCTGGTGAAGGGGCGCGGTTTCCACAGCTGCTGGTGCTCGATCAGGAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/337641‑337811 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgcgggcacgcccgctcccacaggtGTAGCGCCAACCTTGAATG‑TGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGAGGCCCTCAAAACCACCACACATCCTTGCCATGCCCAACCACCTCCACAGCCCCCACCTAAGCACCCGCTTCCAGGCCCTCGACCAGTTC  <  NC_002947/337839‑337694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.