New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 33781135 (0.530)19 (0.360) 22/210 2.0 39.7% intergenic (‑58/+71) PP_0279/PP_0280 hypothetical protein/amino acid ABC transporter permease
?NC_002947 = 337839 30 (0.570)intergenic (‑86/+43) PP_0279/PP_0280 hypothetical protein/amino acid ABC transporter permease

GAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGA  >  NC_002947/337694‑337985
                                                                                                                                                   |                                                                                                                                                  
gAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacct                                                                                                                                                >  2:1460710‑M2/1‑146 (MQ=255)
   cTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtg                                                                                                                                             >  1:339905‑M2/1‑143 (MQ=255)
    tGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtgg                                                                                                                                            >  2:1303665‑M2/1‑142 (MQ=255)
    tGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtgg                                                                                                                                            >  2:56812‑M2/1‑142 (MQ=255)
      gTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCTCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtggga                                                                                                                                          >  1:1632959‑M2/1‑140 (MQ=255)
       tCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgt                                                                                                                                              <  2:1347114‑M2/145‑7 (MQ=255)
       tCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgt                                                                                                                                              >  1:1347114‑M2/1‑139 (MQ=255)
       tCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggag                                                                                                                                         >  1:319590‑M2/1‑139 (MQ=255)
       tCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggag                                                                                                                                         >  1:215769‑M2/1‑139 (MQ=255)
         gAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtgggagcg                                                                                                                                       <  2:1565652‑M2/150‑14 (MQ=255)
          aGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtgggagcgg                                                                                                                                      >  1:1565652‑M2/1‑136 (MQ=255)
          aGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtgggagcgg                                                                                                                                      >  1:913608‑M2/1‑136 (MQ=255)
                    aGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgc                                                                                                                            >  2:1026970‑M2/1‑126 (MQ=255)
                         gTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGc                                                                                                                       <  1:242042/150‑1 (MQ=255)
                             ttAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATacctgtg                                                                                                                                             >  1:491371‑M2/1‑117 (MQ=255)
                                       gttgtgGAGGTGGTTGGGAATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGTAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGtct                                                                                                         <  2:246288/148‑1 (MQ=255)
                                         tgtgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtg                                                                                                                                             >  1:890143‑M2/1‑105 (MQ=255)
                                         tgtgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtg                                                                                                                                             <  2:890143‑M2/112‑8 (MQ=255)
                                          gtgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAg                                                                                                      >  2:561596/1‑150 (MQ=255)
                                           tgGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGc                                                                                                     <  1:706481/150‑1 (MQ=255)
                                            ggAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCg                                                                                                    <  1:561596/150‑1 (MQ=255)
                                                                     gtgtgGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagc                                                                                                                                        <  1:1247444‑M2/89‑13 (MQ=255)
                                                                     gtgtgGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagc                                                                                                                                        >  2:1247444‑M2/1‑77 (MQ=255)
                                                                                                    aCGCCCGCTCCCACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCa                                            >  1:1585559/1‑150 (MQ=18)
                                                                                                    aCGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCa                                            >  2:675109/1‑150 (MQ=255)
                                                                                                      gCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagagg                                                                                                                     >  2:168846‑M2/1‑44 (MQ=255)
                                                                                                      gCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagagg                                                                                                                     <  1:168846‑M2/75‑32 (MQ=255)
                                                                                                        ccGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCAt                                        >  1:1062363/1‑150 (MQ=255)
                                                                                                        ccGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCAt                                        >  1:247619/1‑150 (MQ=255)
                                                                                                         cGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATg                                       >  1:505936/1‑150 (MQ=255)
                                                                                                             cccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACg                                   >  2:605571/1‑150 (MQ=255)
                                                                                                              ccACAGGTGTAGCGCCAACCTTGAATGTGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACga                                  >  1:1297988/1‑150 (MQ=21)
                                                                                                              ccACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACga                                  >  2:282961/1‑150 (MQ=255)
                                                                                                               cacaGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaa                                                           >  2:491371‑M2/1‑35 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcc                                                                    >  1:1216786‑M2/1‑34 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTATacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcc                                                                    <  2:1216786‑M2/114‑81 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaa                                                                                  >  1:1078434‑M2/1‑34 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaa                                                                                  <  2:1078434‑M2/100‑67 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccac                                                                                                        <  2:148581‑M2/78‑45 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccac                                                                                                        >  1:148581‑M2/1‑34 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACacct                                                                                                                                                <  1:1073909‑M2/38‑5 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACacct                                                                                                                                                >  2:1073909‑M2/1‑34 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCATCCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgaga                                >  2:1197183/1‑150 (MQ=255)
                                                                                                                acaGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACgaga                                >  1:328985/1‑150 (MQ=255)
                                                                                                                  aGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATc                                                                                     <  2:1219833/95‑1 (MQ=255)
                                                                                                                  aGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATc                                                                                     >  1:1219833/1‑95 (MQ=255)
                                                                                                                   gctatagcCCCACATCCAAGGTTGGCGCTACacctgtgggtgcgggcgtgcccgcgaagaggccctcaaaaccaccacacacccttgccatgcccaaccccctccacagcccccacctaagcacccgcttccaggccctcgaccagttcc                             >  1:599932‑M2/3‑31 (MQ=255)
                                                                                                                    gTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCtt                                                          <  1:1029044/120‑1 (MQ=255)
                                                                                                                    gTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCtt                                                          >  2:1029044/1‑120 (MQ=255)
                                                                                                                     tataGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctg                           <  2:219680‑M2/150‑122 (MQ=255)
                                                                                                                        aGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctgatc                        >  1:56812‑M2/1‑26 (MQ=255)
                                                                                                                        aGCGCCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctgatc                        >  1:219680‑M2/1‑26 (MQ=255)
                                                                                                                         gcgcCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagcggccctcaaaaccaccacacatccttgccatgcccaaccacctccaca                                                                       >  1:802934‑M2/1‑25 (MQ=255)
                                                                                                                         gcgcCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagcggccctcaaaaccaccacacatccttgccatgcccaaccacctccaca                                                                       <  2:802934‑M2/102‑78 (MQ=255)
                                                                                                                          cgcCACATTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccccctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctgatcga                      >  2:339905‑M2/1‑24 (MQ=255)
                                                                                                                          cgcCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTa                      >  1:712223/1‑150 (MQ=255)
                                                                                                                                  aTTCAAGGTTGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctgatcgagcacca                <  1:489809‑M2/150‑133 (MQ=255)
                                                                                                                                  aTTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAacac                >  1:1262026/1‑150 (MQ=255)
                                                                                                                                   ttCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAg                                                                        >  2:1610482/1‑93 (MQ=255)
                                                                                                                                   ttCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAg                                                                        <  1:1610482/93‑1 (MQ=255)
                                                                                                                                    ttgaatgtGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGc              <  1:1443382/143‑1 (MQ=255)
                                                                                                                                     tgaatgtGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGGTCACCAGGTAGAACACGcc             >  1:106870/7‑150 (MQ=255)
                                                                                                                                         gTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTgcg         >  1:213518/1‑150 (MQ=255)
                                                                                                                                          ttGGCGCTACacctgtgggagcgggcgtgcccgcgaagaggccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctgatcgagcaccagcagctgt        >  2:913608‑M2/1‑10 (MQ=255)
                                                                                                                                           tGGCGCTATACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTgcggc       <  1:1618632/150‑1 (MQ=255)
                                                                                                                                             gcgcTACacctgtgggagcggacgtgcccgcgaagagtccctcaaaaccaccacacatccttgccatgcccaaccacctccacagcccccacctaagcacccgcttccaggccctcgaccagttcctgatcgagcaccagcagctgtgga     >  2:489809‑M2/1‑7 (MQ=255)
                                                                                                                                             gcgcTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCAt                                                                                      <  1:1401404/69‑1 (MQ=255)
                                                                                                                                             gcgcTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCAt                                                                                      >  2:1401404/1‑69 (MQ=255)
                                                                                                                                                cTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCgaaga  >  1:318789/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GAACTGGTCGAGGGCCTGGAAGCGGGTGCTTAGGTGGGGGCTGTGGAGGTGGTTGGGCATGGCAAGGATGTGTGGTGGTTTTGAGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGTATAGCGCCACATTCAAGGTTGGCGCTACACCTGTGGGAGCGGGCGTGCCCGCGAAGCAGTCAGTGAGGTCTCAGCGGCCTTGGCAGGCATCCACGCGCAACCAGCGCTCCAGCAGCTTGAAGCCTTGCACCAGCATGAACGAGATCACCAGGTAGAACACGCCTGCGGCGAAGA  >  NC_002947/337694‑337985

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.