| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 336235 | 1 (0.050) | 5 (0.340) | 5/192 | NT | 53.3% | intergenic (+80/+313) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | = 336301 | 8 (0.550) | intergenic (+146/+247) | PP_0278/PP_0279 | hypothetical protein/hypothetical protein | |||||
GAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/336083‑336235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgtgggagcggccttgcgtcgcgaaAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAATGACCGCGTCAATGCCTAATGCGCCTTACCCTTGGCGATCT < NC_002947/336301‑336168 GAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGC < 1:284860/150‑1 TGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCC < 2:8738/131‑1 TGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGC > 1:323508/1‑130 TGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGC < 2:323508/130‑1 TGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCAAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCC > 1:8738/1‑131 CAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTG > 1:345172/1‑150 GGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGT > 1:232253/1‑66 GGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGT < 2:232253/66‑1 AAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTT > 1:223268/1‑117 AAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTT < 2:223268/117‑1 CGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCT < 1:483998/73‑1 CGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCT > 2:483998/1‑73 GGAGCGGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAATGACCGCGTCAATGCCTAATGCGCCTTACCCTTGGC < 2:263073/150‑1 GGCCTTGCGTCGCGAAAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAATGACCGCGTCAATGCCTAATGCGCCTTACCCTTGGCGATCT < 2:338840/150‑1 GAGGGCGATATGGAGGACGACCATAAATTCCTGGGGGCAGCCGATTACCTGTGCGACATGGCCAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/336083‑336235‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgtgggagcggccttgcgtcgcgaaAGGGCCGCAAAGCGGCCCCCGTTTTCAGCGCAATCTCTGAAATCGCCGGGGCTGCTTTGCAGCCCATTCGCGACGCAAGGCCGCTCCCACAAATGACCGCGTCAATGCCTAATGCGCCTTACCCTTGGCGATCT < NC_002947/336301‑336168 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |