New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 336235	1 (0.050)	5 (0.340)	5/192	NT	53.3%	intergenic (+80/+313)	PP_0278/PP_0279	hypothetical protein/hypothetical protein
	?	NC_002947	= 336301	8 (0.550)					intergenic (+146/+247)	PP_0278/PP_0279	hypothetical protein/hypothetical protein

AGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCA  >  NC_002947/336168‑336450                                                                                                                                      |                                                                                                                                                      agaTCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggcc                                                                                                                                       <  2:338840‑M2/150‑17 (MQ=255)      gCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggccgctcc                                                                                                                                  <  2:263073‑M2/150‑22 (MQ=255)                           gCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGAATGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTaa                                                                                                             >  1:93955/1‑150 (MQ=255)                                                                           gCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAg                                                             <  1:338840/150‑1 (MQ=255)                                                                            cAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggccgctcccacaaatgaccgcgtcaatgcctaatgcgccttacccttggcgatctcgatatcgttcatcagcgccttg                                                            >  1:345172‑M2/1‑59 (MQ=255)                                                                              aaGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggccgctcccacaaatgaccgcgtcaatgcctaatgcgccttaccctt                                                                                           >  1:223268‑M2/1‑57 (MQ=255)                                                                              aaGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggccgctcccacaaatgaccgcgtcaatgcctaatgcgccttaccctt                                                                                           <  2:223268‑M2/117‑61 (MQ=255)                                                                                    ccccGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCgg                                                    >  2:153158/1‑150 (MQ=255)                                                                                      ccGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTGGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGAt                                                  >  2:412887/1‑150 (MQ=255)                                                                                                 agagATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCAttcgcgacgcaaggccgctcccacaaatgaccgcg                                                                                                                    <  1:483998‑M2/73‑36 (MQ=255)                                                                                                 agagATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCAttcgcgacgcaaggccgctcccacaaatgaccgcg                                                                                                                    >  2:483998‑M2/1‑38 (MQ=255)                                                                                                                    ggggCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGcc                    >  1:506703/1‑150 (MQ=255)                                                                                                                         cGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCa                                                          <  1:72638/107‑1 (MQ=255)                                                                                                                         cGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCa                                                          >  2:72638/1‑107 (MQ=255)                                                                                                                         cGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGttt               <  1:263073/150‑1 (MQ=255)                                                                                                                                      tttCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCa  >  1:475643/1‑150 (MQ=255)                                                                                                                                      |                                                                                                                                                      AGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTGGCATTTGGGACCTGAGCGAAAGGCATGCCGGATCGCTACGCCGCTGGTCTTTGCGCAAACGCCTGTTTTTACTGGGCTGCA  >  NC_002947/336168‑336450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.