New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 336235	1 (0.050)	5 (0.340)	5/192	NT	53.3%	intergenic (+80/+313)	PP_0278/PP_0279	hypothetical protein/hypothetical protein
	?	NC_002947	= 336301	8 (0.550)					intergenic (+146/+247)	PP_0278/PP_0279	hypothetical protein/hypothetical protein

CAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTG  >  NC_002947/336145‑336369                                                                                           |                                                                                                                                       cAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAagggccgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttg                                                                             >  1:345172‑M1/1‑91 (MQ=255)                        agaTCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggcc                                                      <  2:338840‑M2/150‑17 (MQ=255)                             gCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTttcgcgacgcaaggccgctcc                                                 <  2:263073‑M2/150‑22 (MQ=255)                                aaGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAagggccgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctt                                                                               >  1:223268‑M1/1‑60 (MQ=255)                                aaGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAagggccgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctt                                                                               <  2:223268‑M1/117‑58 (MQ=255)                                                  gCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGAATGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTaa                            >  1:93955/1‑150 (MQ=255)                                                         cgcgGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAtgggccgcaaagcggcccccgttttcagcgcaatctct                                                                                                  <  1:483998‑M1/73‑39 (MQ=255)                                                         cgcgGTCATTTGTGGGAGCGGCCTTGCGTCGCGAAtgggccgcaaagcggcccccgttttcagcgcaatctct                                                                                                  >  2:483998‑M1/1‑35 (MQ=255)                                                                       ggAGCGGCCTTGCGTCGCGAAagggccgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttgcagcccattcgcgacgcaaggccgctcccacaaatgaccgcgtcaatgcctaatgcgccttacccttggc       <  2:263073‑M1/150‑130 (MQ=255)                                                                            ggCCTTGCGTCGCGAAagggccgcaaagcggcccccgttttcagcgcaatctctgaaatcgccggggctgctttgcagcccattcgcgacgcaaggccgctcccacaaatgaccgcgtcaatgcctaatgcgccttacccttggcgatct  <  2:338840‑M1/150‑135 (MQ=255)                                                                                           |                                                                                                                                       CAAGGCGCTGATGAACGATATCGAGATCGCCAAGGGTAAGGCGCATTAGGCATTGACGCGGTCATTTGTGGGAGCGGCCTTGCGTCGCGAATGGGCTGCAAAGCAGCCCCGGCGATTTCAGAGATTGCGCTGAAAACGGGGGCCGCTTTGCGGCCCTTTCGCGACGCAAGGCCGCTCCCACAAAAGCCGCTTGCGCTAACCACAAGAAATGTTTATGCACAAGTG  >  NC_002947/336145‑336369

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.