| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 353374 = | 30 (1.600) | 3 (0.170) | 3/230 | NT | 10.5% | coding (959/1179 nt) | cbcV | choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | 353413 = | 23 (1.310) | coding (920/1179 nt) | cbcV | choline/betaine/carnitine ABC transporter ATP binding protein | |||||
CAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/353466‑353374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTAT > NC_002947/353413‑353524 CAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAG > 1:426701/1‑92CAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAG < 2:426701/92‑1 TGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGG < 1:715/121‑1 TGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGG > 2:715/1‑121 CTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTAT > 1:87125/1‑150 CCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGC < 1:316751/88‑1 CCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGC > 2:316751/1‑88 CAAGCGGGTCAATGGCTCGGTGTGCCTGGACCCAGGTATCGATTCGTGGCTGGACCTTGGCGAAGGCGGCGCGCTCAAGCGTGCACGCCAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/353466‑353374‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTAT > NC_002947/353413‑353524 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |