New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	353374 =	30 (1.600)	3 (0.170)	3/230	NT	10.5%	coding (959/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	353413 =	23 (1.310)					coding (920/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein

GCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCGGGTTC  >  NC_002947/353272‑353562                                                                                                                                              |                                                                                                                                                      gCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCAc                                                                                                                                               <  2:190339/150‑1 (MQ=255)   cTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGa                                                                                                                                             >  1:188389/1‑150 (MQ=255)          aTGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGAtc                                                                                                                                      >  2:93524/1‑149 (MQ=255)              cGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTcc                                                                                                                                                     <  1:334324/131‑1 (MQ=255)              cGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTcc                                                                                                                                                     >  2:334324/1‑131 (MQ=255)                   tCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCCACGTCCAGCCACGAATCGATACCTGGGTcc                                                                                                                             <  1:93524/150‑1 (MQ=255)                         cctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCa                                                                                                                                                    >  2:715‑M1/79‑121 (MQ=255)                         cctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCa                                                                                                                                                    <  1:715‑M1/43‑1 (MQ=255)                            accacGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACAcc                                                                                                                    >  1:409931/1‑150 (MQ=255)                                cGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATATCTGGGTCCAGGCACACCGAGc                                                                                                                <  2:226852/150‑1 (MQ=255)                                   tCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCAt                                                                                                             <  2:20523/150‑1 (MQ=255)                                      gCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGa                                                                                                          <  2:113363/150‑1 (MQ=255)                                         tGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCTCCAAGGTCCAGCCACGAATCGATTCCTGGTTCCAGGCACACCGAGCCagatcgga                                                                                                       >  2:488180/1‑143 (MQ=255)                                            gcTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCt                                                                                                    >  2:296805/1‑150 (MQ=255)                                                   cagcTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGtt                                                                                             >  1:292617/1‑150 (MQ=255)                                                     gcTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGCGCCCTTGGTCCGCGTGCtgttgt                                                                                           <  2:314574/150‑1 (MQ=255)                                                     gcTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGt                                                                                           >  1:454814/1‑150 (MQ=255)                                                      cTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTc                                                                                          <  2:409931/150‑1 (MQ=255)                                                         cacaTCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATc                                                                                                                                          <  2:28455/99‑1 (MQ=255)                                                         cacaTCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATc                                                                                                                                          >  1:28455/1‑99 (MQ=255)                                                                            cATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTgcgc                                                                    <  2:454814/150‑1 (MQ=255)                                                                                         ccAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGt                                                       >  1:64451/1‑150 (MQ=255)                                                                                          cAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGtt                                                      >  1:297604/1‑150 (MQ=255)                                                                                          cAGCCCGTTCTGGCCTTGGCGTGCAACATGTTGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGtt                                                      >  1:474344/1‑150 (MQ=255)                                                                                                   tggaccttggcgaaggcggcgcgctcaagcgtgcacgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAgg                                                                          <  1:715‑M2/78‑1 (MQ=255)                                                                                                   tggaccttggcgaaggcggcgcgctcaagcgtgcacgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAgg                                                                          >  2:715‑M2/44‑121 (MQ=255)                                                                                                    tGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTg                                            <  2:188389/150‑1 (MQ=255)                                                                                                        cttggcgaaggcggcgcgctcaagcgtgcacgccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTAt                                        >  1:87125‑M2/39‑150 (MQ=255)                                                                                                        CTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTg                                                                                                  <  2:426701‑M1/92‑1 (MQ=255)                                                                                                        CTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTg                                                                                                  >  1:426701‑M1/1‑92 (MQ=255)                                                                                                                   cGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAg                             <  1:407562/150‑1 (MQ=255)                                                                                                                   cGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTCCAGCGGGTTGGTATGGGCGACGAAg                             <  2:64451/150‑1 (MQ=255)                                                                                                                                     tCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATtcgtcg           <  2:368169/150‑1 (MQ=255)                                                                                                                                     tCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAACCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATtcgtcg           <  1:111617/150‑1 (MQ=255)                                                                                                                                        ccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTgc                                                                      >  2:316751‑M2/7‑88 (MQ=255)                                                                                                                                        ccaaggTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTgc                                                                      <  1:316751‑M2/82‑1 (MQ=255)                                                                                                                                              tCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGGCCCGCTTGCAGTTGTCAAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCGGGTTc  >  2:177413/1‑150 (MQ=255)                                                                                                                                              |                                                                                                                                                      GCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTGGTATGGGCGACGAAGGTGCGCACGTATTCGTCGGCCGGGTTC  >  NC_002947/353272‑353562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.