New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	353374 =	30 (1.600)	3 (0.170)	3/230	NT	10.5%	coding (959/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein
	?	NC_002947	353413 =	23 (1.310)					coding (920/1179 nt)	cbcV	choline/betaine/carnitine ABC transporter ATP binding protein

ATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTG  >  NC_002947/353226‑353520                                                                                                                                                     |                                                                                                                                                   aTCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGcc                                                                                                                                                   >  1:368169/1‑150 (MQ=255)        agcaCCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGt                                                                                                                                            <  2:435539/150‑1 (MQ=255)           aCCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCa                                                                                                                                         >  1:314574/1‑150 (MQ=255)               gcgggttgCCGTGGTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCt                                                                                                                                     <  2:437138/146‑1 (MQ=255)                      gCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTgg                                                                                                                                               <  2:208756/133‑1 (MQ=255)                      gCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCCCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTgg                                                                                                                                               >  1:208756/1‑133 (MQ=255)                                     ataccaacccgctgaacgtgctgtgcgggcgcagcctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAg                                                                                                               >  1:87125‑M1/113‑150 (MQ=255)                                     aaTCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAg                                                                                                               >  2:322366/1‑150 (MQ=255)                                               gCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCAc                                                                                                     <  2:190339/150‑1 (MQ=255)                                                 cTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGa                                                                                                   >  1:188389/1‑150 (MQ=255)                                                        aTGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGAtc                                                                                            >  2:93524/1‑149 (MQ=255)                                                            cGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTcc                                                                                                           <  1:334324/131‑1 (MQ=255)                                                            cGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTcc                                                                                                           >  2:334324/1‑131 (MQ=255)                                                                 tCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCCACGTCCAGCCACGAATCGATACCTGGGTcc                                                                                   <  1:93524/150‑1 (MQ=255)                                                                   gcagcctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTgg                                                                                                                                               >  2:316751‑M1/83‑88 (MQ=255)                                                                   gcagcctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTgg                                                                                                                                               <  1:316751‑M1/6‑1 (MQ=255)                                                                       cctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCa                                                                                                          >  2:715‑M1/79‑121 (MQ=255)                                                                       cctgatgcgcagcctggacaactgcaagcgggtcaatggctcggtgtgcctggacccaggtatcgattcgtggctggaCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCa                                                                                                          <  1:715‑M1/43‑1 (MQ=255)                                                                          accacGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACAcc                                                                          >  1:409931/1‑150 (MQ=255)                                                                             acGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGc                                                                                                                                      >  1:147648/1‑87 (MQ=255)                                                                             acGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGc                                                                                                                                      <  2:147648/87‑1 (MQ=255)                                                                              cGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATATCTGGGTCCAGGCACACCGAGc                                                                      <  2:226852/150‑1 (MQ=255)                                                                                 tCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCAt                                                                   <  2:20523/150‑1 (MQ=255)                                                                                    gCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGa                                                                <  2:113363/150‑1 (MQ=255)                                                                                       tGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCTCCAAGGTCCAGCCACGAATCGATTCCTGGTTCCAGGCACACCGAGCCagatcgga                                                             >  2:488180/1‑143 (MQ=255)                                                                                          gcTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCt                                                          >  2:296805/1‑150 (MQ=255)                                                                                                 cagcTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGtt                                                   >  1:292617/1‑150 (MQ=255)                                                                                                   gcTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGCGCCCTTGGTCCGCGTGCtgttgt                                                 <  2:314574/150‑1 (MQ=255)                                                                                                   gcTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGt                                                 >  1:454814/1‑150 (MQ=255)                                                                                                    cTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTc                                                <  2:409931/150‑1 (MQ=255)                                                                                                       cacaTCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATc                                                                                                <  2:28455/99‑1 (MQ=255)                                                                                                       cacaTCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATc                                                                                                >  1:28455/1‑99 (MQ=255)                                                                                                                          cATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTgcgc                          <  2:454814/150‑1 (MQ=255)                                                                                                                                       ccAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGt             >  1:64451/1‑150 (MQ=255)                                                                                                                                        cAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGtt            >  1:297604/1‑150 (MQ=255)                                                                                                                                        cAGCCCGTTCTGGCCTTGGCGTGCAACATGTTGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGtt            >  1:474344/1‑150 (MQ=255)                                                                                                                                                  tGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTg  <  2:188389/150‑1 (MQ=255)                                                                                                                                                   ggCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAgg                                                                                                              <  2:313124/41‑1 (MQ=255)                                                                                                                                                   ggCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAgg                                                                                                              >  1:313124/1‑41 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGCATGCCGATGTCGGCGTGCACCACGGTCGGCCTGCGCTCCAGCAGCTCCACATCTTGCCCCGGTGCCCATTTCTGCATGTCCAGCCCGTTCTGGCCTTGGCGTGCACGCTTGAGCGCGCCGCCTTCGCCAAGGTCCAGCCACGAATCGATACCTGGGTCCAGGCACACCGAGCCATTGACCCGCTTGCAGTTGTCCAGGCTGCGCATCAGGCTGCGCCCGCACAGCACGTTCAGCGGGTTG  >  NC_002947/353226‑353520

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.