New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 398599	21 (1.120)	4 (0.230)	4/228	NT	18.4%	intergenic (‑112/+100)	PP_0331/PP_0332	hypothetical protein/acyltransferase
	?	NC_002947	= 398664	16 (0.920)					intergenic (‑177/+35)	PP_0331/PP_0332	hypothetical protein/acyltransferase

AGAGACATGCTGCTTAAGTCTTCGTCTTTGGGAGGCCGCGCACAACTAGCAGAATTATCAGGGGGCGCAACGTAACTGTGCTGATGTCAACCGGCTGCCTGCTTCGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/398480‑398599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGCTCCTACGCGGATTACCACATCCCCAAGGATAGGCTCTACCTGCGTAGGGGCGGGTTTACCCGCGAAGAGGCCGAAGCAGGCAGCCGGTTGACATCAGCACAGTTACGTTGCGCCCCCTGATAATTCTGCTAGT  <  NC_002947/398664‑398524                                                                                                                                                                                                                                                                       AGAGACATGCTGCTTAAGTCTTCGTCTTTGGGAGGCCGCGCACAACTAGCAGAATTATCAGGGGGCGCAACGTAACTGTGCTGATGTCAACCGGCTGCCTGCTTCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTACCACATCC                                                                                                                 >  2:93643/1‑150                                      GCGCACAACTAGCAGAATTATCAGGGGGCGCAACGTAACTGTGCTGATGTCAACCGGCTGCCTGCTTCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTACCACATCCCCAAGGATAGTCTCTACCTGCGTAGGGGCGGGTTTAC                                                                            <  1:93643/150‑1                                                 GCAGAATTATCAGGGGGCGCAACGTAACTGTGCTGATGTCAACCGGCTGCCTGCTTCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTACCACATCCCCAAGGATAGGCTCTACCTGCGTAGGGGCGG                                                                                  >  1:432534/1‑133                                                 GCAGAATTATCAGGGGGCGCAACGTAACTGTGCTGATGTCAACCGGCTGCCTGCTTCGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTACCACATCCCCAAGGATAGGCTCTACCTGCGTAGGGGCGG                                                                                  <  2:432534/133‑1                                                                                                                TTCGCGGGTGAACCCGCTCCTACGCGGATTACCACATCCCCAAGGATAGGCTCTACCTGCGTAGGGGCGGGTTTACCCGCGAAGAGGCCGAAGCAGGCAGCCGGTTGACATCAGCACAGTTACGTTGCGCCCCCTGATAATTCTGCTAGT  >  2:79436/1‑150                                                                                                                                                                                                                                                                       AGAGACATGCTGCTTAAGTCTTCGTCTTTGGGAGGCCGCGCACAACTAGCAGAATTATCAGGGGGCGCAACGTAACTGTGCTGATGTCAACCGGCTGCCTGCTTCGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/398480‑398599 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggtGAACCCGCTCCTACGCGGATTACCACATCCCCAAGGATAGGCTCTACCTGCGTAGGGGCGGGTTTACCCGCGAAGAGGCCGAAGCAGGCAGCCGGTTGACATCAGCACAGTTACGTTGCGCCCCCTGATAATTCTGCTAGT  <  NC_002947/398664‑398524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.