| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2056021 | 35 (1.860) | 4 (0.250) | 3/214 | NT | 11.5% | intergenic (+27/‑116) | aroC/PP_1831 | chorismate synthase/membrane protein |
| ? | NC_002947 | = 2056095 | 31 (1.900) | intergenic (+101/‑42) | aroC/PP_1831 | chorismate synthase/membrane protein | |||||
CACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2055857‑2056021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggtGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCACATCGGCATTCT < NC_002947/2056095‑2055948 CACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTCCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAAC > 1:64069/1‑150 CCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTC > 1:466759/1‑150 GTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGG < 2:466759/150‑1 GTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGG < 1:392984/150‑1 CGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAA > 2:156072/1‑150 GATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAG < 1:156072/150‑1 GCCTCTTCGCGGGTGAACTCGCTCCTACGCGGATTTCCCCGTGGCACTGCACCTGAGGGCAGTGATATCGCAATGTAGGGGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCA < 1:661/150‑1 TCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCA > 1:34302/1‑58 TCTTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCA < 2:34302/58‑1 TTCGCGGGTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCACATCG < 1:362934/150‑1 GTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCACATCGGCATTCT > 1:361212/1‑150 GTGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCAGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCACATCGGCATTCT > 1:338587/1‑150 CACGACCCGTGCGTGGGCATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2055857‑2056021‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcctcttcgcgggtGAACCCGCTCCTACGCGGATTTCACCCTGTCACTGCACCTGAGGGCAGTGATATCCCAATGTAGGAGCGGGTTTACCCGCGAAGAGGCCGTTGCAGTTGGATCAGCGCTGGCCCAGCACCGGGGTATTCACTTGCACATCGGCATTCT < NC_002947/2056095‑2055948 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |