New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2056021	35 (1.860)	4 (0.250)	3/214	NT	11.5%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2056095	31 (1.900)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein

ATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGC  >  NC_002947/2055875‑2056169                                                                                                                                                   |                                                                                                                                                     aTCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTaaa                                                                                                                                                   >  2:392984/1‑150 (MQ=255)                 ttGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTgg                                                                                                                                   <  1:69621/150‑1 (MQ=255)                 ttGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTgg                                                                                                                                   >  1:460691/1‑150 (MQ=255)                        ggCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCa                                                                                                                            >  1:175077/1‑150 (MQ=255)                                            tGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGAc                                                                                                        >  2:130583/1‑150 (MQ=255)                                             gATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACa                                                                                                       >  1:263228/1‑150 (MQ=255)                                                ggACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAggg                                                                                                    >  2:361212/1‑150 (MQ=255)                                                 gACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGt                                                                                                   >  1:438942/1‑150 (MQ=255)                                                 gACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCCCCTACATTGGTGTATCACTGCCCTCAGGTGCAGTGACAGGGt                                                                                                   >  1:136272/1‑150 (MQ=255)                                                   ccaccTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGCGGCAGGGCCCGGGTGa                                                                                                 >  1:47971/1‑150 (MQ=255)                                                       ctgctgCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACACGGTCAAATc                                                                                             >  1:85971/1‑150 (MQ=255)                                                                  ccGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGc                                                                                  <  1:462414/150‑1 (MQ=255)                                                                  ccGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGc                                                                                  >  2:462414/1‑150 (MQ=255)                                                                    gTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgg                                                                                <  2:466759‑M1/150‑71 (MQ=255)                                                                    gTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTaaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgg                                                                                <  1:392984‑M1/150‑71 (MQ=255)                                                                          aGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACTGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCac                                                                          >  1:338587‑M2/1‑148 (MQ=255)                                                                          aGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCac                                                                          >  1:361212‑M2/1‑148 (MQ=255)                                                                                 cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgggtttacccgcgaa                                                                   >  2:156072‑M1/1‑67 (MQ=255)                                                                                 cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACAtt                                                                                                                                     <  2:485572/84‑1 (MQ=255)                                                                                 cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACAtt                                                                                                                                     >  1:485572/1‑84 (MQ=255)                                                                                 cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTc                                                                            >  1:321081/1‑141 (MQ=255)                                                                                 cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTc                                                                            <  2:321081/141‑1 (MQ=255)                                                                                 cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaa                                                                   <  1:362934‑M2/150‑10 (MQ=255)                                                                                  gATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgggtttacccgcgaag                                                                  <  1:156072‑M1/150‑85 (MQ=255)                                                                                      tgCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCCCCTACATTGCGATATCACTGCCCTCAGGTGCAGTGCCACGGGGAAATCCGCGTAGGAGCGAGTTCacccgcgaagaggc                                                              <  1:661‑M2/150‑15 (MQ=255)                                                                                           gTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCggg                                                                               >  2:210601/1‑128 (MQ=255)                                                                                           gTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCggg                                                                               <  1:210601/128‑1 (MQ=255)                                                                                                   cccGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGccc                                                        >  2:280405/1‑143 (MQ=255)                                                                                                   cccGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGccc                                                        <  1:280405/143‑1 (MQ=255)                                                                                                              gCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTcc                                                  >  1:406041/1‑138 (MQ=255)                                                                                                              gCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTcc                                                  <  2:406041/138‑1 (MQ=255)                                                                                                                   cgcTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATAGGGCTATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCTTAGGAGCGTGTTCACCCGCGCAAAGGCCGGCCCAGGTCCCCACAAGGCCAccccct                                 >  1:203413/1‑148 (MQ=255)                                                                                                                      tGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCa                              >  2:407685/1‑150 (MQ=255)                                                                                                                        aTCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAAGTTCAGTGACAGTGTGAAATCCCCCGAGGAGGGGCGTCCCCCGCGAAGAGGCCGGCCCAGGTCCCCACAACGACACCCCATGcccc                            <  2:136272/150‑4 (MQ=255)                                                                                                                         tCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAAcc                           >  1:358479/1‑150 (MQ=255)                                                                                                                          ccAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAAccc                          >  1:419463/1‑150 (MQ=255)                                                                                                                             aCTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGATCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATc                       >  1:417115/1‑150 (MQ=255)                                                                                                                                    cGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACt                <  2:263228/150‑1 (MQ=255)                                                                                                                                     ggCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTg               <  2:438942/150‑1 (MQ=255)                                                                                                                                      gCCTCTTCGCGGGTgaactcgctcctacgcggatttccccgtggcactgcacctgagggcagtgatatcgcaatgtaggggcgggtttacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgca              <  1:661‑M1/150‑137 (MQ=255)                                                                                                                                       ccTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATc                       >  1:351612/1‑140 (MQ=255)                                                                                                                                       ccTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATc                       <  2:351612/140‑1 (MQ=255)                                                                                                                                        ctctTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTgggg            >  1:111577/1‑148 (MQ=255)                                                                                                                                         tctTCGCGGGTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggca                                                                                                       <  2:34302‑M1/58‑48 (MQ=255)                                                                                                                                         tctTCGCGGGTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggca                                                                                                       >  1:34302‑M1/1‑11 (MQ=255)                                                                                                                                         tctTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGgcgc           >  1:465720/1‑150 (MQ=255)                                                                                                                                          ctTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatc          <  1:156072‑M2/150‑67 (MQ=255)                                                                                                                                           ttCGCGGGTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgggtttacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcg         <  1:362934‑M1/150‑142 (MQ=255)                                                                                                                                           ttCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcg         >  2:156072‑M2/1‑83 (MQ=255)                                                                                                                                              gcgGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCACCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTc      >  1:362473/1‑150 (MQ=255)                                                                                                                                                  gTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgggtttacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcggcattct  >  1:361212‑M1/1‑2 (MQ=255)                                                                                                                                                  gTgaacccgctcctacgcggatttcaccctgtcactgcacctgagggcagtgatatcccaatgtaggagcgggtttacccgcgaagaggcagttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcggcattct  >  1:338587‑M1/1‑2 (MQ=255)                                                                                                                                                   |                                                                                                                                                     ATCCGTGCCACGCCGATTGCCGAGGCGATGATGGCCATTGCGTTGATGGACCACCTGCTGCGCCACCGTGCGCAGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGC  >  NC_002947/2055875‑2056169

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.