New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2056021	35 (1.860)	4 (0.250)	3/214	NT	11.5%	intergenic (+27/‑116)	aroC/PP_1831	chorismate synthase/membrane protein
	?	NC_002947	= 2056095	31 (1.900)					intergenic (+101/‑42)	aroC/PP_1831	chorismate synthase/membrane protein

AGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGC  >  NC_002947/2055948‑2056241                                                                                                                                                    |                                                                                                                                                   aGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACTGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCac                                                                                                                                                  >  1:338587‑M2/1‑148 (MQ=255) aGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCac                                                                                                                                                  >  1:361212‑M2/1‑148 (MQ=255)        cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTc                                                                                                                                                    <  2:321081/141‑1 (MQ=255)        cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTc                                                                                                                                                    >  1:321081/1‑141 (MQ=255)        cGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaa                                                                                                                                           <  1:362934‑M2/150‑10 (MQ=255)             tgCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCCCCTACATTGCGATATCACTGCCCTCAGGTGCAGTGCCACGGGGAAATCCGCGTAGGAGCGAGTTCacccgcgaagaggc                                                                                                                                      <  1:661‑M2/150‑15 (MQ=255)                          cccGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGccc                                                                                                                                >  2:280405/1‑143 (MQ=255)                          cccGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGccc                                                                                                                                <  1:280405/143‑1 (MQ=255)                                     gCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTcc                                                                                                                          <  2:406041/138‑1 (MQ=255)                                     gCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTcc                                                                                                                          >  1:406041/1‑138 (MQ=255)                                          cgcTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATAGGGCTATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCTTAGGAGCGTGTTCACCCGCGCAAAGGCCGGCCCAGGTCCCCACAAGGCCAccccct                                                                                                         >  1:203413/1‑148 (MQ=255)                                             tGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCa                                                                                                      >  2:407685/1‑150 (MQ=255)                                               aTCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAAGTTCAGTGACAGTGTGAAATCCCCCGAGGAGGGGCGTCCCCCGCGAAGAGGCCGGCCCAGGTCCCCACAACGACACCCCATGcccc                                                                                                    <  2:136272/150‑4 (MQ=255)                                                tCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAAcc                                                                                                   >  1:358479/1‑150 (MQ=255)                                                 ccAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAAccc                                                                                                  >  1:419463/1‑150 (MQ=255)                                                    aCTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGATCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATc                                                                                               >  1:417115/1‑150 (MQ=255)                                                           cGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACt                                                                                        <  2:263228/150‑1 (MQ=255)                                                            ggCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTg                                                                                       <  2:438942/150‑1 (MQ=255)                                                              ccTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATc                                                                                               >  1:351612/1‑140 (MQ=255)                                                              ccTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATc                                                                                               <  2:351612/140‑1 (MQ=255)                                                               ctctTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTgggg                                                                                    >  1:111577/1‑148 (MQ=255)                                                                tctTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGgcgc                                                                                   >  1:465720/1‑150 (MQ=255)                                                                 ctTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatc                                                                                  <  1:156072‑M2/150‑67 (MQ=255)                                                                  ttCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcg                                                                                 >  2:156072‑M2/1‑83 (MQ=255)                                                                     gcgGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCACCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTc                                                                              >  1:362473/1‑150 (MQ=255)                                                                               ccGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTTacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcggcattctgcgcac                                                                    <  1:392984‑M2/150‑81 (MQ=255)                                                                               ccGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaagaggccgttgcagttggatcagcgctggcccagcaccggggtattcacttgcacatcggcattctgcgcac                                                                    <  2:466759‑M2/150‑81 (MQ=255)                                                                               ccGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTAc                                                                    <  2:460691/150‑1 (MQ=255)                                                                                     cTACATTGGGATATCGCTGCCCTCAGGGGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTc                                                              <  2:661/150‑1 (MQ=255)                                                                                                    aCTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCctgctg                                               >  2:449397/1‑150 (MQ=255)                                                                                                     cTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTgg                                              >  1:257668/1‑150 (MQ=255)                                                                                                      tGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaaga                                                                                                                                         <  2:34302‑M2/58‑12 (MQ=255)                                                                                                      tGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCacccgcgaaga                                                                                                                                         >  1:34302‑M2/1‑47 (MQ=255)                                                                                                       gCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGc                                            <  2:358479/150‑1 (MQ=255)                                                                                                           tCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCca                                        >  1:33020/1‑150 (MQ=255)                                                                                                           tCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGAGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCCCAAGACCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCca                                        <  2:170142/150‑1 (MQ=255)                                                                                                                         aGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTg                          <  2:33020/150‑1 (MQ=255)                                                                                                                         aGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTg                          <  1:130583/150‑1 (MQ=255)                                                                                                                           ggTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGgc                        >  2:104957/1‑150 (MQ=255)                                                                                                                                 aTCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTa                  >  2:11268/1‑150 (MQ=255)                                                                                                                                           gAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTa                                                            >  1:58487/1‑98 (MQ=255)                                                                                                                                           gAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTa                                                            <  2:58487/98‑1 (MQ=255)                                                                                                                                             gCGGGTTTACCCGCGAAGAGGCCGTCCCAGGTCCCCACAAGGCCACCCCAt                                                                                                         <  2:454482/51‑1 (MQ=21)                                                                                                                                             gCGGGTTTACCCGCGAAGAGGCCGTCCCAGGTCCCCACAAGGCCACCCCAt                                                                                                         >  1:454482/1‑51 (MQ=21)                                                                                                                                              cGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTg     <  2:419463/150‑1 (MQ=255)                                                                                                                                                 gTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGc  >  2:76469/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AGAATGCCGATGTGCAAGTGAATACCCCGGTGCTGGGCCAGCGCTGATCCAACTGCAACGGCCTCTTCGCGGGTAAACCCGCTCCTACATTGGGATATCACTGCCCTCAGGTGCAGTGACAGGGTGAAATCCGCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCCCAGGTCCCCACAAGGCCACCCCATGCAACCCATCCCCTACTGGCGCCTGTCCAGCTTCTACCTGTTCTATTTCGCCCTGCTGGGCTCCACCGCACCGTTCCTGGCGCTGTACTTCGACCACCTGGGC  >  NC_002947/2055948‑2056241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.