| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2990927 = | 13 (0.690) | 4 (0.230) | 4/232 | NT | 24.8% | coding (596/2169 nt) | vgrG‑I | type VI secretion system protein |
| ? | NC_002947 | 2990961 = | 12 (0.680) | coding (562/2169 nt) | vgrG‑I | type VI secretion system protein | |||||
CAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2991081‑2990927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgaGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGCGCACCTGATG > NC_002947/2990961‑2991105 CAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAG < 2:32578/150‑1 GGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGC < 1:261412/150‑1 TTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAA > 1:507160/1‑131 TTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAA < 2:507160/131‑1 TGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGGTGCAGTCCCTCGGCCTTGATGGCGCCATGGC‑TGAGC‑AGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGT < 1:141198/150‑1 AGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAG > 1:447663/1‑103 AGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAG < 2:447663/103‑1 AGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGC < 1:243704/77‑1 AGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGC > 2:243704/1‑77 CCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACT > 1:212721/1‑82 CCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACT < 2:212721/82‑1 CGCCATCAAGGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGC < 2:141198/150‑1 GCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGCGCACCTGATG > 2:162481/1‑150 CAGGCCGGTGAGACGGACTTGGCGTTCATCGCCCGCCTTGCCGCTGAAGAAGGCTTCGTCTACCGCTTTGCGCACAGTGAAAAGCTGCACAAGCTGATCATCACCGATCGGCTGCAGTCCCTCGGCC‑TGAT‑CAGCCATGGCGCCATCAAGGCCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2991081‑2990927‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgaGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGCGCACCTGATG > NC_002947/2990961‑2991105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |