New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2990927 =	13 (0.690)	4 (0.230)	4/232	NT	24.8%	coding (596/2169 nt)	vgrG‑I	type VI secretion system protein
	?	NC_002947	2990961 =	12 (0.680)					coding (562/2169 nt)	vgrG‑I	type VI secretion system protein

CACCTGGCGAGCGGTGCGCACCTGCTCGCTGTAGCGCAAGCGGCGAAGGCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGG  >  NC_002947/2990782‑2991050                                                                                                                                                  |                                                                                                                              catcaggtgcgcgaattctgcgttcaggccggtgagacggacttggcgttcatcgcccgccttgccgctgaagaaggcttcgtctaccgctttgcgcacagtgaaaagctgcacaagctgatcatcaccgatcggctgcagtcccTCGGc                                                                                                                           >  2:162481‑M1/146‑150 (MQ=255)  aCCTGGCGAGCGGTGCGCACCTGCTCGCTGTAGCGCAAGCGGCGAAGGCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGcc                                                                                                                          <  1:163991/150‑1 (MQ=255)           gcgaattctgcgttcaggccggtgagacggacttggcgttcatcgcccgccttgccgctgaagaaggcttcgtctaccgctttgcgcacagtgaaaagctgcacaagctgatcatcaccgatcggctgcagtcccTCGGCCTTGATGgcg                                                                                                                 <  2:141198‑M1/15‑1 (MQ=255)                                       aGCGGCGAAGGCGGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCa                                                                                   <  1:105091/150‑1 (MQ=255)                                                 gCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGt                                                                         <  2:382208/150‑1 (MQ=255)                                                        aTGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg                                                                                          >  1:400362/1‑126 (MQ=255)                                                        aTGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg                                                                                          <  2:400362/126‑1 (MQ=255)                                                                                        cAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCg                                  >  1:426629/1‑150 (MQ=255)                                                                                                 gTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGaa                         >  2:485418/1‑150 (MQ=255)                                                                                                    agtgaaaagctgcacaagctgatcatcaccgatcggctgcagtcccTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg                                                                                          >  1:212721‑M1/47‑82 (MQ=255)                                                                                                    agtgaaaagctgcacaagctgatcatcaccgatcggctgcagtcccTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg                                                                                          <  2:212721‑M1/36‑1 (MQ=255)                                                                                                                 acaagctgatcatcaccgatcggctgcagtcccTCGGCCT‑GCTCA‑GCCATGGCGCCATCAAGGCCGAGGGACTGCACCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCa         <  1:141198‑M1/117‑1 (MQ=255)                                                                                                                       tcATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGt                                                                         <  2:397030/80‑1 (MQ=255)                                                                                                                       tcATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGt                                                                         >  1:397030/1‑80 (MQ=255)                                                                                                                          tCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGt                                >  1:64731/1‑118 (MQ=255)                                                                                                                          tCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGt                                <  2:64731/118‑1 (MQ=40)                                                                                                                                      tCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAggcggg  <  1:54894/136‑1 (MQ=37)                                                                                                                                      tCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAggcggg  >  2:54894/1‑136 (MQ=37)                                                                                                                                                  |                                                                                                                              CACCTGGCGAGCGGTGCGCACCTGCTCGCTGTAGCGCAAGCGGCGAAGGCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGG  >  NC_002947/2990782‑2991050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.