| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2990927 = | 13 (0.690) | 4 (0.230) | 4/232 | NT | 24.8% | coding (596/2169 nt) | vgrG‑I | type VI secretion system protein |
| ? | NC_002947 | 2990961 = | 12 (0.680) | coding (562/2169 nt) | vgrG‑I | type VI secretion system protein | |||||
AGCGGCGAAGGCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGCGCACCTGATG > NC_002947/2990820‑2991105 | aGCGGCGAAGGCGGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCa < 1:105091/150‑1 (MQ=255) gCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGt < 2:382208/150‑1 (MQ=255) aTGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg < 2:400362/126‑1 (MQ=255) aTGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg > 1:400362/1‑126 (MQ=255) tgccgctgaagaaggcttcgtctaccgctttgcgcacagtgaaaagctgcacaagctgatcatcaccgatcgggtgcagtccctcggccttgatggcgccatggctgagcaggccgaGGGACTGCAGCCGATCGGTGATGATCAGCTtgt < 1:141198‑M2/33‑1 (MQ=255) cAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCg > 1:426629/1‑150 (MQ=255) gTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGaa > 2:485418/1‑150 (MQ=255) agtgaaaagctgcacaagctgatcatcaccgatcggctgcagtcccTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg > 1:212721‑M1/47‑82 (MQ=255) agtgaaaagctgcacaagctgatcatcaccgatcggctgcagtcccTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAgg < 2:212721‑M1/36‑1 (MQ=255) acaagctgatcatcaccgatcggctgcagtcccTCGGCCT‑GCTCA‑GCCATGGCGCCATCAAGGCCGAGGGACTGCACCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCa < 1:141198‑M1/117‑1 (MQ=255) tcATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGt > 1:397030/1‑80 (MQ=255) tcATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGt < 2:397030/80‑1 (MQ=255) tCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGt < 2:64731/118‑1 (MQ=40) tCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGt > 1:64731/1‑118 (MQ=255) tCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAggcggg < 1:54894/136‑1 (MQ=37) tCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAggcggg > 2:54894/1‑136 (MQ=37) cctcggcctgatcagccatggcgccatcaaggccgaGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACt < 2:212721‑M2/46‑1 (MQ=255) cctcggcctgatcagccatggcgccatcaaggccgaGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACt > 1:212721‑M2/37‑82 (MQ=255) GCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACt > 2:243704‑M1/1‑77 (MQ=255) GCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACt < 1:243704‑M1/77‑1 (MQ=255) GCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGcc < 1:261412‑M1/150‑1 (MQ=255) CTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCcttct > 1:447663‑M1/1‑103 (MQ=255) CTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCcttct < 2:447663‑M1/103‑1 (MQ=255) CTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTg < 2:32578‑M1/150‑1 (MQ=255) TTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCaa > 1:507160‑M1/1‑131 (MQ=255) TTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCaa < 2:507160‑M1/131‑1 (MQ=255) gcgcCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAg > 1:56070/1‑150 (MQ=32) aTGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCCGCCTGAACGCAGAATTc < 2:426629/150‑1 (MQ=17) cgccatcaaggccgaGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTcgc < 2:141198‑M2/135‑1 (MQ=255) gccgaGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGCGCACCTGATg > 2:162481‑M2/6‑150 (MQ=255) | AGCGGCGAAGGCAGGGTATGGCTTGATCGCCACCGCTGTTCGCTTGGTACAGGACGCTGTCAGGGCCTACAGGCTCGTCGTCATCGCCGAAACCCTCGTCTTCATGGTCGGCCTTGATGGCGCCATGGCTG‑ATCA‑GGCCGAGGGACTGCAGCCGATCGGTGATGATCAGCTTGTGCAGCTTTTCACTGTGCGCAAAGCGGTAGACGAAGCCTTCTTCAGCGGCAAGGCGGGCGATGAACGCCAAGTCCGTCTCACCGGCCTGAACGCAGAATTCGCGCACCTGATG > NC_002947/2990820‑2991105 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |