| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3428398 | 17 (0.900) | 4 (0.220) | 4/236 | NT | 16.6% | coding (63/1494 nt) | PP_3044 | lambda family portal protein |
| ? | NC_002947 | = 3428432 | 24 (1.330) | coding (97/1494 nt) | PP_3044 | lambda family portal protein | |||||
GCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3428302‑3428398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCA < NC_002947/3428432‑3428288 GCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGGCCTTGA < 1:21724/142‑1GCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGGCCTTGA > 2:21724/1‑142 TTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGG < 1:493306/124‑1 TTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGG > 2:493306/1‑124 CCAGCCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCA > 1:199579/1‑150 CCAGCCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCA > 2:253961/1‑150 GCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3428302‑3428398‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagcCAGAGGAACGCCGACCTTCGGCGGCCCCCTCATAGCTGGCCTTGATCCGCTCGGGCACCAGAAGCCCCGAACGTGTGGAGATGTAGCGGCCGCTCACAGCCCCTTACCCCCATGGTAAAGCCGAACCACGCGGGAACGCGGGCCA < NC_002947/3428432‑3428288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |