New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3428398	17 (0.900)	4 (0.220)	4/236	NT	16.6%	coding (63/1494 nt)	PP_3044	lambda family portal protein
	?	NC_002947	= 3428432	24 (1.330)					coding (97/1494 nt)	PP_3044	lambda family portal protein

TGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATTGATAAACGCGTCAGCAATCTGAT  >  NC_002947/3428288‑3428568                                                                                                                                                 |                                                                                                                                         tGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctgg                                                                                                                                     >  1:199579‑M2/1‑145 (MQ=255) tGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctgg                                                                                                                                     >  2:253961‑M2/1‑145 (MQ=255)         gTTCCCGCGTGGTTCGGCTTTACCAGGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGcccc                                                                                                                             >  2:282418/1‑150 (MQ=255)                               ccATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTg                                                                                                       >  2:216266/1‑150 (MQ=255)                                cATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGa                                                                                                      >  2:276561/1‑150 (MQ=255)                                cATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGa                                                                                                      >  1:124268/1‑150 (MQ=255)                                 aTGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGAt                                                                                                     >  1:47403/1‑150 (MQ=255)                                    ggggTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTAt                                                                                                  <  1:8575/150‑1 (MQ=255)                                                tgtgAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCg                                                                                      >  1:48338/1‑150 (MQ=255)                                                           gCTACATCTCCACACGTTCGGGGCTTTTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCg                                                                             <  1:255666/148‑1 (MQ=255)                                                           gCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCg                                                                             >  2:255666/1‑148 (MQ=255)                                                                        acGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGc                                                              >  1:205252/1‑150 (MQ=255)                                                                             cGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCgg                                                         <  1:276561/150‑1 (MQ=255)                                                                                ggCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCCGTCACGTTCGCGGGCTGCGGTAc                                                      >  2:163251/1‑150 (MQ=255)                                                                                               aGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATg                                       <  2:124268/150‑1 (MQ=255)                                                                                                     tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaagccgaaccacgc                                         >  2:21724‑M2/1‑45 (MQ=255)                                                                                                     tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaagccgaaccacgc                                         <  1:21724‑M2/142‑98 (MQ=255)                                                                                                     tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGc                                                                                                >  1:284079/1‑87 (MQ=255)                                                                                                     tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGc                                                                                                <  2:284079/87‑1 (MQ=255)                                                                                                        aGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACg                              >  1:54358/1‑150 (MQ=255)                                                                                                           ccAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaa                                                     <  1:493306‑M2/124‑86 (MQ=255)                                                                                                           ccAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaa                                                     >  2:493306‑M2/1‑39 (MQ=255)                                                                                                           ccAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTa                           <  2:47403/150‑1 (MQ=255)                                                                                                             aGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCAGCTACGTGCTGATGGTGCGGTACGCAATGACCCGTATGCGGCCAACGTTAtt                         <  1:216266/150‑1 (MQ=255)                                                                                                                tATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATTGAt                      <  2:48338/150‑1 (MQ=255)                                                                                                                         gccgccGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGAccc                                            <  1:58453/119‑1 (MQ=255)                                                                                                                         gccgccGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGAccc                                            >  2:58453/1‑119 (MQ=255)                                                                                                                                 aGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATTGATAAACGCGTCAGCAATCt     <  2:205252/150‑1 (MQ=255)                                                                                                                                   gTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGGCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCACCGTTGTTGATAAACGCGTCAGCAATCTGa   >  2:88914/1‑150 (MQ=255)                                                                                                                                    tCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGAGGGGCATCAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATTGATAAACGCGTCAGCAATCTGAt  <  1:408326/150‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                         TGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATTGATAAACGCGTCAGCAATCTGAT  >  NC_002947/3428288‑3428568

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.