New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3428398	17 (0.900)	4 (0.220)	4/236	NT	16.6%	coding (63/1494 nt)	PP_3044	lambda family portal protein
	?	NC_002947	= 3428432	24 (1.330)					coding (97/1494 nt)	PP_3044	lambda family portal protein

TCCCAGTCCGCTGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATT  >  NC_002947/3428277‑3428545                                                                                                                          |                                                                                                                                                    tCCCAGTCCGCTGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCTCCGAAGGTCGGCGtt                                                                                                                         >  2:408326/1‑150 (MQ=255)            tGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctgg                                                                                                              >  2:253961‑M2/1‑145 (MQ=255)            tGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctgg                                                                                                              >  1:199579‑M2/1‑145 (MQ=255)                    gTTCCCGCGTGGTTCGGCTTTACCAGGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGcccc                                                                                                      >  2:282418/1‑150 (MQ=255)                          gcgTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCcagaggaacgccgaccttcggcggccccctcatagctggccttga                                                                                                        <  1:21724‑M1/142‑46 (MQ=255)                          gcgTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCcagaggaacgccgaccttcggcggccccctcatagctggccttga                                                                                                        >  2:21724‑M1/1‑97 (MQ=255)                                      tttACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCcagaggaacgccgaccttcggcggccccctcatagctgg                                                                                                              >  2:493306‑M1/1‑85 (MQ=255)                                      tttACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCcagaggaacgccgaccttcggcggccccctcatagctgg                                                                                                              <  1:493306‑M1/124‑40 (MQ=255)                                          ccATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTg                                                                                >  2:216266/1‑150 (MQ=255)                                           cATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGa                                                                               >  2:276561/1‑150 (MQ=255)                                           cATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGa                                                                               >  1:124268/1‑150 (MQ=255)                                            aTGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGAt                                                                              >  1:47403/1‑150 (MQ=255)                                               ggggTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTAt                                                                           <  1:8575/150‑1 (MQ=255)                                                           tgtgAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCg                                                               >  1:48338/1‑150 (MQ=255)                                                                      gCTACATCTCCACACGTTCGGGGCTTTTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCg                                                      <  1:255666/148‑1 (MQ=255)                                                                      gCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCg                                                      >  2:255666/1‑148 (MQ=255)                                                                                   acGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGc                                       >  1:205252/1‑150 (MQ=255)                                                                                        cGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCgg                                  <  1:276561/150‑1 (MQ=255)                                                                                           ggCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCCGTCACGTTCGCGGGCTGCGGTAc                               >  2:163251/1‑150 (MQ=255)                                                                                                          aGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATg                <  2:124268/150‑1 (MQ=255)                                                                                                                tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaagccgaaccacgc                  >  2:21724‑M2/1‑45 (MQ=255)                                                                                                                tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaagccgaaccacgc                  <  1:21724‑M2/142‑98 (MQ=255)                                                                                                                tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGc                                                                         >  1:284079/1‑87 (MQ=255)                                                                                                                tCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGc                                                                         <  2:284079/87‑1 (MQ=255)                                                                                                                   aGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACg       >  1:54358/1‑150 (MQ=255)                                                                                                                      ccagccagaggaacgccgaccttcggcggccccctcatagctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaagccgaaccacgcgggaacgcgggcca    >  1:199579‑M1/1‑5 (MQ=255)                                                                                                                      ccagccagaggaacgccgaccttcggcggccccctcatagctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaagccgaaccacgcgggaacgcgggcca    >  2:253961‑M1/1‑5 (MQ=255)                                                                                                                      ccAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaa                              <  1:493306‑M2/124‑86 (MQ=255)                                                                                                                      ccAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGgctggccttgatccgctcgggcaccagaagccccgaacgtgtggagatgtagcggccgctcacagccccttacccccatggtaaa                              >  2:493306‑M2/1‑39 (MQ=255)                                                                                                                      ccAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTa    <  2:47403/150‑1 (MQ=255)                                                                                                                        aGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCAGCTACGTGCTGATGGTGCGGTACGCAATGACCCGTATGCGGCCAACGTTAtt  <  1:216266/150‑1 (MQ=255)                                                                                                                          |                                                                                                                                                    TCCCAGTCCGCTGGCCCGCGTTCCCGCGTGGTTCGGCTTTACCATGGGGGTAAGGGGCTGTGAGCGGCCGCTACATCTCCACACGTTCGGGGCTTCTGGTGCCCGAGCGGATCAAGGCCAGCTATGAGGGGGCCGCCGAAGGTCGGCGTTCCTCTGGCTGGGACGCCCCGGATACGGGCCCCAACAGCCTGATTATGCCGGCCCTTCGCAATCTGCGGTCACGTTCGCGGGCTGCGGTACGCAATGACCCGTATGCGGCCAACGTTATT  >  NC_002947/3428277‑3428545

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.