New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5171015 =	32 (1.700)	3 (0.160)	3/240	NT	8.8%	coding (1196/1308 nt)	PP_4548	oxidoreductase
	?	NC_002947	5171054 =	31 (1.690)					coding (1235/1308 nt)	PP_4548	oxidoreductase

CAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5171067‑5171015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGGG  >  NC_002947/5171054‑5171201                                                                                                                                                                                                           CAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAA                                                     >  2:188407/1‑150             CATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAG                                                               <  1:133622/128‑1             CATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAG                                                               >  2:133622/1‑128                                                    GATGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGGG  >  1:119711/1‑150                                                                                                                                                                                                           CAGCAAGTCCCCCATCGGCACCCGCACATGCCTGCACTGGGCGAAGGTGTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5171067‑5171015 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgaTGGGGGACTTGCTGGGGAACCCGCTGCTGGCGGCGGGGATGTGGTATTACCAGATGCTTGAGAAGCTGCGCTGAGTTGCGCCTACAGGGACTCACAATGTCTGAAGACGGCGCCGCATCTTATTGTGGGGCCTTGTGTCGCGAAAGGG  >  NC_002947/5171054‑5171201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.