| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5863651 | 21 (1.120) | 4 (0.220) | 4/238 | NT | 16.9% | coding (294/870 nt) | PP_5138 | LysR family transcriptional regulator |
| ? | NC_002947 | = 5863681 | 19 (1.050) | coding (264/870 nt) | PP_5138 | LysR family transcriptional regulator | |||||
GATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5863579‑5863651‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGATTACCGGGTG < NC_002947/5863681‑5863534 GATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTACTAC > 1:93098/1‑113GATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTACTAC < 2:93098/113‑1 ACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTAC > 1:112885/1‑103 ACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTAC < 2:112885/103‑1 GCCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGATTACCGGGTG < 1:233732/150‑1 GATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5863579‑5863651‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggcCCAGGGCAGCCTGCGCATTGCTGCCACTGCGCCTTACTACATTCTCGACCTGGTCAAGATCTATCGCGAACGCCTGCCGCAGGTTGAAGTGGCGGTGGAGATCGGCAACTCGCAGCAGGTGCTGGAAATGCTCGAGGATTACCGGGTG < NC_002947/5863681‑5863534 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |