New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5863651	21 (1.120)	4 (0.220)	4/238	NT	16.9%	coding (294/870 nt)	PP_5138	LysR family transcriptional regulator
	?	NC_002947	= 5863681	19 (1.050)					coding (264/870 nt)	PP_5138	LysR family transcriptional regulator

TTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGT  >  NC_002947/5863513‑5863799                                                                                                                                           |                                                                                                                                                     ttGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGgcagc                                                                                                                                           <  1:196658/150‑1 (MQ=255)        gacgCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATgcgc                                                                                                                                    >  2:78573/1‑150 (MQ=255)                      cACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgc                                                                                                                      <  1:233732‑M2/150‑3 (MQ=255)                         ccGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCa                                                                                                                                   >  2:432433/1‑134 (MQ=255)                         ccGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCa                                                                                                                                   <  1:432433/134‑1 (MQ=255)                          cGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTgg                                                                                                                  <  2:476819/150‑1 (MQ=255)                              aaTCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCAc                                                                                                              <  1:430582/150‑1 (MQ=255)                                 ccTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGt                                                                                                           <  2:448045/150‑1 (MQ=255)                                         aTTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGc                                                                                                   <  1:78573/150‑1 (MQ=255)                                              cAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTgg                                                                                                                  >  2:268001/1‑130 (MQ=255)                                              cAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTAGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTgg                                                                                                                  <  1:268001/130‑1 (MQ=255)                                                       ctgcGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTc                                                                                     <  1:475273/150‑1 (MQ=255)                                                                   gATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCccagggcagcctgcgcattgctgccactgcgccttactac                                                                                                              >  1:93098‑M1/1‑73 (MQ=255)                                                                   gATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCccagggcagcctgcgcattgctgccactgcgccttactac                                                                                                              <  2:93098‑M1/113‑41 (MQ=255)                                                                       tcCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTgcagc                                                                     >  2:43778/1‑150 (MQ=255)                                                                       tcCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTgca                                                                       >  1:273322/1‑148 (MQ=255)                                                                       tcCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTgca                                                                       <  2:273322/148‑1 (MQ=255)                                                                         cACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGAGCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCATGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGcagcag                                                                   >  2:480588/1‑150 (MQ=255)                                                                          aCCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCccagggcagcctgcgcattgctgccactgcgccttac                                                                                                                 >  1:112885‑M1/1‑66 (MQ=255)                                                                          aCCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCccagggcagcctgcgcattgctgccactgcgccttac                                                                                                                 <  2:112885‑M1/103‑38 (MQ=255)                                                                           ccGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAgcg                                                                 >  1:175842/1‑150 (MQ=255)                                                                                        cTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCgg                                                    >  1:59266/1‑150 (MQ=255)                                                                                        cTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCgg                                                    <  2:233732/150‑1 (MQ=255)                                                                                                                     ccAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAaca                       <  2:175842/150‑1 (MQ=255)                                                                                                                         gTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAg                   >  2:233931/1‑150 (MQ=255)                                                                                                                                  gtagtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggtggagatc                                               >  1:93098‑M2/1‑40 (MQ=255)                                                                                                                                  gtagtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggtggagatc                                               <  2:93098‑M2/113‑74 (MQ=255)                                                                                                                                     gtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggt                                                      <  2:112885‑M2/103‑67 (MQ=255)                                                                                                                                     gtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggt                                                      >  1:112885‑M2/1‑37 (MQ=255)                                                                                                                                      taAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCGGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCccgccg      >  1:438859/1‑150 (MQ=255)                                                                                                                                          gCccagggcagcctgcgcattgctgccactgcgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggtggagatcggcaactcgcagcaggtgctggaaatgctcgaggattaccgggtg  <  1:233732‑M1/150‑149 (MQ=255)                                                                                                                                           |                                                                                                                                                     TTGCGACGACGCGGCAATGTCCACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGT  >  NC_002947/5863513‑5863799

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.