New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5863651	21 (1.120)	4 (0.220)	4/238	NT	16.9%	coding (294/870 nt)	PP_5138	LysR family transcriptional regulator
	?	NC_002947	= 5863681	19 (1.050)					coding (264/870 nt)	PP_5138	LysR family transcriptional regulator

CACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCTCCACGGCGTACTGGCCTT  >  NC_002947/5863534‑5863826                                                                                                                                                    |                                                                                                                                                  cACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgc                                                                                                                                                 <  1:233732‑M2/150‑3 (MQ=255)     cGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTgg                                                                                                                                             <  2:476819/150‑1 (MQ=255)         aaTCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCAc                                                                                                                                         <  1:430582/150‑1 (MQ=255)            ccTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGt                                                                                                                                      <  2:448045/150‑1 (MQ=255)                    aTTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGc                                                                                                                              <  1:78573/150‑1 (MQ=255)                         cAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTgg                                                                                                                                             >  2:268001/1‑130 (MQ=255)                         cAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTAGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTgg                                                                                                                                             <  1:268001/130‑1 (MQ=255)                                  ctgcGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTc                                                                                                                <  1:475273/150‑1 (MQ=255)                                                  tcCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTgcagc                                                                                                >  2:43778/1‑150 (MQ=255)                                                  tcCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTgca                                                                                                  >  1:273322/1‑148 (MQ=255)                                                  tcCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTgca                                                                                                  <  2:273322/148‑1 (MQ=255)                                                    cACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGAGCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCATGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGcagcag                                                                                              >  2:480588/1‑150 (MQ=255)                                                      ccGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAgcg                                                                                            >  1:175842/1‑150 (MQ=255)                                                                   cTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCgg                                                                               >  1:59266/1‑150 (MQ=255)                                                                   cTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCgg                                                                               <  2:233732/150‑1 (MQ=255)                                                                                                ccAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAaca                                                  <  2:175842/150‑1 (MQ=255)                                                                                                    gTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAg                                              >  2:233931/1‑150 (MQ=255)                                                                                                             gtagtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggtggagatc                                                                          >  1:93098‑M2/1‑40 (MQ=255)                                                                                                             gtagtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggtggagatc                                                                          <  2:93098‑M2/113‑74 (MQ=255)                                                                                                                gtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggt                                                                                 <  2:112885‑M2/103‑67 (MQ=255)                                                                                                                gtaAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGgccttactacattctcgacctggtcaagatctatcgcgaacgcctgccgcaggttgaagtggcggt                                                                                 >  1:112885‑M2/1‑37 (MQ=255)                                                                                                                 taAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCGGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCccgccg                                 >  1:438859/1‑150 (MQ=255)                                                                                                                                         aGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCTCCACGGCGTAc         <  1:480588/150‑1 (MQ=255)                                                                                                                                         aGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCCGCAGCAGGCGCAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCTCCACGGCGTAc         <  2:400774/150‑1 (MQ=255)                                                                                                                                             tGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCCGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCTCCACGGCGTACTGGc     <  1:388413/150‑1 (MQ=255)                                                                                                                                               cccTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGgcagca                                                                          <  2:98724/79‑1 (MQ=255)                                                                                                                                               cccTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGgcagca                                                                          >  1:98724/1‑79 (MQ=255)                                                                                                                                                ccTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCTCCACGGCGTACTGGCCtt  >  2:103467/1‑150 (MQ=255)                                                                                                                                                 cTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCt                    >  2:246631/1‑131 (MQ=255)                                                                                                                                                 cTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCt                    <  1:246631/131‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  CACCCGGTAATCCTCGAGCATTTCCAGCACCTGCTGCGAGTTGCCGATCTCCACCGCCACTTCAACCTGCGGCAGGCGTTCGCGATAGATCTTGACCAGGTCGAGAATGTAGTAAGGCGCAGTGGCAGCAATGCGCAGGCTGCCCTGGGCCTGGCCACTGTTGCGCAGCTCGAACTCGATGTCGGCTTCCTGCTGCAGCAGCGCCTTGACCATCGGCAGCAGGCGTAAGCCCTCCTCGCTCAACACCAGGCGCCGCCCGCCGCGGTAGAACAGCTCCACGGCGTACTGGCCTT  >  NC_002947/5863534‑5863826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.