New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2465132 =	24 (1.280)	4 (0.220)	4/238	NT	15.3%	coding (549/1353 nt)	PP_2157	sensor histidine kinase
	?	NC_002947	2465167 =	21 (1.160)					coding (514/1353 nt)	PP_2157	sensor histidine kinase

GCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGC  >  NC_002947/2464985‑2465273                                                                                                                                                    |                                                                                                                                              gcgcTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATgg                                                                                                                                             <  2:449965/150‑1 (MQ=255) gcctgtccgtgcccctgacacagggagccatgcagtcgccgcgactgaccctgtacctcgacatcacccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTgg                                                                                                                                             <  1:395803‑M1/3‑1 (MQ=255)       gAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTAGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCTACGTGGGCCATCTGCCGCAATGGGCGCAg                                                                                                                                       >  2:83006/1‑150 (MQ=255)           gCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCg                                                                                                                                   >  1:193374/1‑150 (MQ=255)           gCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCg                                                                                                                                   >  2:255025/1‑150 (MQ=255)             aTCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCt                                                                                                                                 >  1:336904/1‑150 (MQ=255)                tgacacagggcgccatgcagtcgccgcgactgaccctgtacctcgacatcacccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTgcg                                                                                                                              <  2:355350‑M1/18‑1 (MQ=255)                 tCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTgcgg                                                                                                                             <  2:386112/150‑1 (MQ=255)                     ggCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTgcgggcgg                                                                                                                         >  1:215235/1‑150 (MQ=255)                                        cgcgactgaccctgtacctcgacatcacccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGc                                                                                                      >  1:355350‑M1/109‑150 (MQ=255)                                              gctgGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGAt                                                                                                <  1:70007/150‑1 (MQ=255)                                                 ggCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCCCAGTTTTCGCAGGCCGCTGCGGGCGGCCCAGGCACCCGATAGTGCGGTGATTAg                                                                                             >  2:395803/1‑150 (MQ=255)                                                  gCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAgc                                                                                            >  1:103363/1‑150 (MQ=255)                                                    cAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAgcgc                                                                                          <  1:255025/150‑1 (MQ=255)                                                           gCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGGGATTAGCGCCGACAgg                                                                                   >  2:281321/1‑150 (MQ=255)                                                             cAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGcc                                                                                 <  2:193374/150‑1 (MQ=255)                                                                  acccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCaa                                                                                                            >  2:39404‑M1/83‑118 (MQ=255)                                                                  acccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCaa                                                                                                            <  1:39404‑M1/36‑1 (MQ=255)                                                                                         aGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGt                                                              <  2:21850/141‑1 (MQ=255)                                                                                         aGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGt                                                              >  1:21850/1‑141 (MQ=255)                                                                                                           cgcgcTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtgg                                   <  2:336904/150‑1 (MQ=255)                                                                                                                       cTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATg                       >  2:143237/1‑150 (MQ=255)                                                                                                                        tGGCGGCCACCTTGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGt                      >  2:47178/1‑150 (MQ=255)                                                                                                                                aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGTTGGTGGTGGGGGAGGTCGAGGTAc              >  2:117511/1‑150 (MQ=255)                                                                                                                                aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtg                              >  2:160803/1‑134 (MQ=255)                                                                                                                                aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtg                              <  1:160803/134‑1 (MQ=255)                                                                                                                                aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTAc              >  2:333350/1‑150 (MQ=255)                                                                                                                                         aTCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtgg                             <  2:140738/126‑1 (MQ=255)                                                                                                                                         aTCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtgg                             >  1:140738/1‑126 (MQ=255)                                                                                                                                            tGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGGTGTCGAGGTACAGGGTCAGTcgc  <  2:103363/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                              GCGCTGGAAGGCATCGTCCAGGCGCTGCAGCATCGCGTTCATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGC  >  NC_002947/2464985‑2465273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.