New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2465132 =	24 (1.280)	4 (0.220)	4/238	NT	15.3%	coding (549/1353 nt)	PP_2157	sensor histidine kinase
	?	NC_002947	2465167 =	21 (1.160)					coding (514/1353 nt)	PP_2157	sensor histidine kinase

CATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCGCCCTGTGTCAGGGGCACGGACAGGC  >  NC_002947/2465024‑2465313                                                                                                                                                |                                                                                                                                                   cgcgactgaccctgtacctcgacatcacccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGc                                                                                                                                              >  1:355350‑M1/109‑150 (MQ=255)       gctgGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGAt                                                                                                                                        <  1:70007/150‑1 (MQ=255)          ggCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCCCAGTTTTCGCAGGCCGCTGCGGGCGGCCCAGGCACCCGATAGTGCGGTGATTAg                                                                                                                                     >  2:395803/1‑150 (MQ=255)           gCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAgc                                                                                                                                    >  1:103363/1‑150 (MQ=255)             cAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAgcgc                                                                                                                                  <  1:255025/150‑1 (MQ=255)                    gCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGGGATTAGCGCCGACAgg                                                                                                                           >  2:281321/1‑150 (MQ=255)                      cAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGcc                                                                                                                         <  2:193374/150‑1 (MQ=255)                           acccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCaa                                                                                                                                                    >  2:39404‑M1/83‑118 (MQ=255)                           acccaccaccagcacttcctgcagggcatgcaacgactgatctggctgacggtcggcctgtcggcgctaatcaccgcactatTGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCaa                                                                                                                                                    <  1:39404‑M1/36‑1 (MQ=255)                                                  aGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGt                                                                                                      >  1:21850/1‑141 (MQ=255)                                                  aGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGt                                                                                                      <  2:21850/141‑1 (MQ=255)                                                                    cgcgcTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtgg                                                                           <  2:336904/150‑1 (MQ=255)                                                                                cTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATg                                                               >  2:143237/1‑150 (MQ=255)                                                                                 tGGCGGCCACCTTGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGt                                                              >  2:47178/1‑150 (MQ=255)                                                                                         aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGTTGGTGGTGGGGGAGGTCGAGGTAc                                                      >  2:117511/1‑150 (MQ=255)                                                                                         aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtg                                                                      <  1:160803/134‑1 (MQ=255)                                                                                         aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtg                                                                      >  2:160803/1‑134 (MQ=255)                                                                                         aCCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTAc                                                      >  2:333350/1‑150 (MQ=255)                                                                                                  aTCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtgg                                                                     <  2:140738/126‑1 (MQ=255)                                                                                                  aTCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCtggtggtgg                                                                     >  1:140738/1‑126 (MQ=255)                                                                                                     tGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGGTGTCGAGGTACAGGGTCAGTcgc                                          <  2:103363/150‑1 (MQ=255)                                                                                                      gcactattgggtgcctgggccgcccgcagcggcctgcgcccaATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTcgcg                                         >  1:355350‑M2/43‑150 (MQ=255)                                                                                                            ttgggtgcctgggccgcccgcagcggcctgcgcccaATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTggtgggt                                                                   <  1:39404‑M2/82‑1 (MQ=255)                                                                                                            ttgggtgcctgggccgcccgcagcggcctgcgcccaATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTggtgggt                                                                   >  2:39404‑M2/37‑118 (MQ=255)                                                                                                                GCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGCCAGTCGCGGCGACTGCAt                               >  1:47178‑M1/1‑150 (MQ=255)                                                                                                                            gcgggcggCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCGCCCTgtgt                   <  2:178469/150‑1 (MQ=255)                                                                                                                              cgcagcggcctgcgcccaATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCGCCCTGTGTCa                 <  2:355350‑M2/132‑1 (MQ=255)                                                                                                                                   gcCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCGCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCGCCCTGTGTCAGGGGc            >  1:107915/1‑150 (MQ=255)                                                                                                                                    cccAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCGCCCTGTGTCAGGGGCa           >  2:182454/1‑150 (MQ=255)                                                                                                                                             ccaATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCTCCCTGTGTCAGGGGCACGGACAGGc  <  1:395803‑M2/147‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                   CATGCTGCTGGCCAGCTCGGCCAACTCTTCGGGCATCTGCGCCACCGGCAGACGGGTGGTGAGGGAGCGCGCTGACACGCTGGCGGCCACCTGGCCCATCTGCCGCAATGGGCGCAGGCCGCTGCGGGCGGCCCAGGCACCCAATAGTGCGGTGATTAGCGCCGACAGGCCGACCGTCAGCCAGATCAGTCGTTGCATGCCCTGCAGGAAGTGCTGGTGGTGGGTGATGTCGAGGTACAGGGTCAGTCGCGGCGACTGCATGGCGCCCTGTGTCAGGGGCACGGACAGGC  >  NC_002947/2465024‑2465313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.