New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4828690 =	33 (1.760)	3 (0.170)	3/228	NT	11.4%	coding (2545/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4828734 =	16 (0.920)					coding (2501/12954 nt)	pvdL	non‑ribosomal peptide synthetase

GCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTG  >  NC_002947/4828543‑4828828                                                                                                                                                    |                                                                                                                                           gCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGcc                                                                                                                                          >  1:29831/1‑150 (MQ=255)    ccTTGAGGCTGAAGCGCGCGGCGCTGTGTGCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCt                                                                                                                                       <  1:255550/150‑1 (MQ=255)     cTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTg                                                                                                                                      >  1:153999/1‑150 (MQ=255)       ggtgcgcctgggggacgaagagcatcagctgtgggtgaccctgcaccacatcgttgccgacggctggtcgctgaacatcctgctcgaagaattcgccaagctgtatgccgctcgctgccaaggcctggaggccaacctggcGCCGCTGcc                                                                                                                                    >  1:151658‑M1/142‑150 (MQ=255)                 gcgcgcGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTa                                                                                                                          <  1:236387/150‑1 (MQ=255)                                          tgaccctgcaccacatcgttgccgacggctggtcgctgaacatcctgctcgaagaattcgccaagctgtatgccgctcgctgccaaggcctggaggccaacctggcGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCagcggcagcggc                                                                                                 >  1:322507‑M1/107‑150 (MQ=255)                                           tggcGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAgcggcg                                                                                                >  2:341033/1‑150 (MQ=255)                                             gcgcgcGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGcc                                                                                              <  2:201205/150‑1 (MQ=255)                                                   gggTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTg                                                                                        <  2:504672/150‑1 (MQ=255)                                                                acaGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCt                                                                                                                                       <  2:337641/90‑1 (MQ=255)                                                                acaGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCt                                                                                                                                       >  1:337641/1‑90 (MQ=255)                                                                 caGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTg                                                                          <  2:331231/150‑1 (MQ=255)                                                                    gTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGc                                                                                                                    >  2:78258/1‑105 (MQ=255)                                                                    gTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGc                                                                                                                    <  1:78258/105‑1 (MQ=255)                                                                            ccGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCgg                                                               >  1:427871/1‑150 (MQ=255)                                                                              ggCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCa                                                             <  1:341033/150‑1 (MQ=255)                                                                                     caccacCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCg                                                                                                                            <  2:430760/80‑1 (MQ=255)                                                                                     caccacCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCg                                                                                                                            >  1:430760/1‑80 (MQ=255)                                                                                     caccacCAAGGTGTGCCTCCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGc                                                                                                                              <  1:322987/78‑1 (MQ=255)                                                                                     caccacCAAGGTGTGCCTCCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGc                                                                                                                              >  2:322987/1‑78 (MQ=255)                                                                                       ccaccaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCACCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTg                                                    >  2:367628/1‑150 (MQ=255)                                                                                        caccaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTgg                                                   >  1:446868/1‑150 (MQ=255)                                                                                         accaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCg                                                                                                                      <  2:230188/82‑1 (MQ=255)                                                                                         accaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCg                                                                                                                      >  1:230188/1‑82 (MQ=255)                                                                                         accaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGc                                                  <  1:91515/150‑1 (MQ=255)                                                                                           caAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCcagcgg                                                                                                        <  1:429709/94‑1 (MQ=255)                                                                                           caAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCcagcgg                                                                                                        >  2:429709/1‑94 (MQ=255)                                                                                            aaGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGaa                                               <  2:29831/150‑1 (MQ=255)                                                                                                  ttcgccaagctgtatgccgctcgctgccaaggcctggaggccaacctggcGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTcc                                                                                  >  2:249747‑M1/51‑109 (MQ=255)                                                                                                  ttcgccaagctgtatgccgctcgctgccaaggcctggaggccaacctggcGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTcc                                                                                  <  1:249747‑M1/59‑1 (MQ=255)                                                                                                      ttCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGc                                     >  1:349214/1‑150 (MQ=255)                                                                                                       tCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCa                                    <  2:153999/150‑1 (MQ=255)                                                                                                            tACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTg                                                    <  2:151666/129‑1 (MQ=255)                                                                                                            tACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTg                                                    >  1:151666/1‑129 (MQ=255)                                                                                                               tGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGGCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTc                            >  1:359388/1‑150 (MQ=255)                                                                                                                           tCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCg                >  2:276595/1‑150 (MQ=255)                                                                                                                             ggCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTc              <  1:135463/150‑1 (MQ=255)                                                                                                                                         agccagccATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGAtgtg  <  2:409464/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                           GCACCTTGAGGCTGAAGCGCGCGGCGCTGTGTTCGCGCTGGCTGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTG  >  NC_002947/4828543‑4828828

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.