New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4828690 =	33 (1.760)	3 (0.170)	3/228	NT	11.4%	coding (2545/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4828734 =	16 (0.920)					coding (2501/12954 nt)	pvdL	non‑ribosomal peptide synthetase

TGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAGGGTCACCCACAGCTGATGCTCTTCGTCCCCCAGGCGCACCAGGGTTACC  >  NC_002947/4828585‑4828883                                                                                                                                                      |                                                                                                                                                      tggcGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAgcggcg                                                                                                                                                       >  2:341033/1‑150 (MQ=255)   gcgcgcGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGcc                                                                                                                                                     <  2:201205/150‑1 (MQ=255)         gggTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTg                                                                                                                                               <  2:504672/150‑1 (MQ=255)                       caGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTg                                                                                                                                 <  2:331231/150‑1 (MQ=255)                                  ccGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCgg                                                                                                                      >  1:427871/1‑150 (MQ=255)                                    ggCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCa                                                                                                                    <  1:341033/150‑1 (MQ=255)                                             ccaccaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCACCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTg                                                                                                           >  2:367628/1‑150 (MQ=255)                                              caccaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTgg                                                                                                          >  1:446868/1‑150 (MQ=255)                                               accaAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGc                                                                                                         <  1:91515/150‑1 (MQ=255)                                                  aaGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGaa                                                                                                      <  2:29831/150‑1 (MQ=255)                                                        ttcgccaagctgtatgccgctcgctgccaaggcctggaggccaacctggcGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTcc                                                                                                                                         <  1:249747‑M1/59‑1 (MQ=255)                                                        ttcgccaagctgtatgccgctcgctgccaaggcctggaggccaacctggcGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTcc                                                                                                                                         >  2:249747‑M1/51‑109 (MQ=255)                                                            ttCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGc                                                                                            >  1:349214/1‑150 (MQ=255)                                                             tCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCa                                                                                           <  2:153999/150‑1 (MQ=255)                                                                  tACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTg                                                                                                           <  2:151666/129‑1 (MQ=255)                                                                  tACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTg                                                                                                           >  1:151666/1‑129 (MQ=255)                                                                     tGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGGCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTc                                                                                   >  1:359388/1‑150 (MQ=255)                                                                                 tCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCg                                                                       >  2:276595/1‑150 (MQ=255)                                                                                   ggCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTc                                                                     <  1:135463/150‑1 (MQ=255)                                                                                           ggaggccaacctggcgccgctgccgctgggttacgccgactacggcagctggcagcggcGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGaa                                                                                                      >  2:249747‑M2/60‑109 (MQ=255)                                                                                           ggaggccaacctggcgccgctgccgctgggttacgccgactacggcagctggcagcggcGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGaa                                                                                                      <  1:249747‑M2/50‑1 (MQ=255)                                                                                               agccagccATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGAtgtg                                                         <  2:409464/150‑1 (MQ=255)                                                                                                       atttCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAggg                                                 <  1:431777‑M1/146‑1 (MQ=255)                                                                                                          gccgctgccgctgggttacgccgactacggcagctggcagcggcGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAGGGTCa                                              >  1:322507‑M2/45‑150 (MQ=255)                                                                                                           CCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAGGGTCAc                                             >  2:446868‑M1/1‑150 (MQ=255)                                                                                                                  CAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGGCCAGCCGTCGGCAACGATGTGGTGCAGGGTCACCCACAGc                                      >  2:311211‑M1/1‑150 (MQ=255)                                                                                                                                             ggcagcggcGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAGGGTCACCCACAGCTGATGCTCTTCGTCCCCCAGGCGCAcc           >  1:151658‑M2/10‑150 (MQ=255)                                                                                                                                                      gcCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAGGGTCACCCACAGCTGATGCTCTTCGTCCCCCAGGCGCACCAGGGTTAcc  <  2:349214/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                      TGGCGCGCGGGTGGTCAGTGCACAGGTCGAGCGCCGGCAGCTCACCACCAAGGTGTGCCTTCCAGTACTGCAACTGGCGCTCGGCTTCACCGTCAGCCAGCCATTGCCGCTGCCAGCTGCCGTAGTCGGCGTAACCCAGCGGCAGCGGCGCCAGGTTGGCCTCCAGGCCTTGGCAGCGAGCGGCATACAGCTTGGCGAATTCTTCGAGCAGGATGTTCAGCGACCAGCCGTCGGCAACGATGTGGTGCAGGGTCACCCACAGCTGATGCTCTTCGTCCCCCAGGCGCACCAGGGTTACC  >  NC_002947/4828585‑4828883

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.