New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6117789	11 (0.590)	3 (0.170)	3/236	NT	16.4%	coding (42/471 nt)	PP_5367	transketolase domain‑containing protein
	?	NC_002947	= 6117858	20 (1.110)					intergenic (‑28/+68)	PP_5367/PP_5368	transketolase domain‑containing protein/MFS transporter

GTTCGGACCCTACGAACAAATCCGCGCCGATCACACCGGCAATCGACAACATGGTCACATGTCGAGGCTTGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAAC  >  NC_002947/6117658‑6117935                                                                                                                                    |                                                                                                                                                   gTTCGGACCCTACGAACAAATCCGCGCCGATCACACCGGCAATCGACAACATGGTCACATGTCGAGGCTTGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATgg                                                                                                                                  <  2:385147/150‑1 (MQ=255)                        gcgcCGATCACACCGGCAATCGACAACATGGTCACATGTCGAGGCTTGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAgg                                                                                                                >  1:221121/1‑145 (MQ=255)                        gcgcCGATCACACCGGCAATCGACAACATGGTCACATGTCGAGGCTTGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAgg                                                                                                                <  2:221121/145‑1 (MQ=255)                                                                 aGGCTTGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGttttcgctctctatggttaagcggtgaagtgtccctggcactgcaccctacccataacaagagcaaaagcagggaccataat                                                                  <  2:341444‑M1/150‑83 (MQ=255)                                                                     ttGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGttttcgctctctatggttaagcggtgaagtgtccctggcactgcaccctacccataacaagagcaaaagcaggga                                                                         <  2:268878‑M1/139‑76 (MQ=255)                                                                     ttGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGttttcgctctctatggttaagcggtgaagtgtccctggcactgcaccctacccataacaagagcaaaagcaggga                                                                         >  1:268878‑M1/1‑64 (MQ=255)                                                                                         aTCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTa                                                                                                                               <  1:499658/65‑1 (MQ=255)                                                                                         aTCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTa                                                                                                                               >  2:499658/1‑65 (MQ=255)                                                                                             cTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAgg                                      >  2:351040/1‑150 (MQ=255)                                                                                                      ccAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACatat                             >  1:232094/1‑150 (MQ=255)                                                                                                          aCGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCt                         <  1:351040/150‑1 (MQ=255)                                                                                                                      tCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACatat                             <  1:60488/134‑1 (MQ=255)                                                                                                                      tCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACatat                             >  2:60488/1‑134 (MQ=255)                                                                                                                        aTTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCGGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGttt           >  2:375647/1‑150 (MQ=255)                                                                                                                        aTTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAAcagggaccataatgactatgacgacgtctgggaaagccagcgatcagttggctcagggattcaagcct           <  2:341444‑M2/150‑69 (MQ=255)                                                                                                                               tCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAAcagggaccataatgactatgacgacgtctgggaaagccagcgatcagttggctcagggattcaa               >  1:268878‑M2/1‑75 (MQ=255)                                                                                                                               tCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAAcagggaccataatgactatgacgacgtctgggaaagccagcgatcagttggctcagggattcaa               <  2:268878‑M2/139‑65 (MQ=255)                                                                                                                                 ccTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAAc  >  1:157122/1‑150 (MQ=255)                                                                                                                                    |                                                                                                                                                   GTTCGGACCCTACGAACAAATCCGCGCCGATCACACCGGCAATCGACAACATGGTCACATGTCGAGGCTTGAATCCCTGAGCCAACTGATCGCTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAAC  >  NC_002947/6117658‑6117935

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.