New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6117789	11 (0.590)	3 (0.170)	3/236	NT	16.4%	coding (42/471 nt)	PP_5367	transketolase domain‑containing protein
	?	NC_002947	= 6117858	20 (1.110)					intergenic (‑28/+68)	PP_5367/PP_5368	transketolase domain‑containing protein/MFS transporter

CTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAATGACACATCAACGCCGGATTTATTCCTTATAAAGCAAA  >  NC_002947/6117750‑6117981                                                                                                             |                                                                                                                            cTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAgg                                                                                    >  2:351040/1‑150 (MQ=255)          ccAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACatat                                                                           >  1:232094/1‑150 (MQ=255)              aCGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCt                                                                       <  1:351040/150‑1 (MQ=255)                          tCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACatat                                                                           >  2:60488/1‑134 (MQ=255)                          tCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACatat                                                                           <  1:60488/134‑1 (MQ=255)                            aTTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCGGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGttt                                                         >  2:375647/1‑150 (MQ=255)                            aTTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAAcagggaccataatgactatgacgacgtctgggaaagccagcgatcagttggctcagggattcaagcct                                                         <  2:341444‑M2/150‑69 (MQ=255)                                   tCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAAcagggaccataatgactatgacgacgtctgggaaagccagcgatcagttggctcagggattcaa                                                             >  1:268878‑M2/1‑75 (MQ=255)                                   tCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAAcagggaccataatgactatgacgacgtctgggaaagccagcgatcagttggctcagggattcaa                                                             <  2:268878‑M2/139‑65 (MQ=255)                                     ccTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAAc                                                >  1:157122/1‑150 (MQ=255)                                              gCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAAt                                       <  2:232094/150‑1 (MQ=255)                                                    gTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAATGAcaca                                 <  1:406519/150‑1 (MQ=255)                                                        tGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAATGACACATCaa                             >  1:98835/1‑150 (MQ=255)                                                         gggTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGc                                                                   <  1:381375/111‑1 (MQ=255)                                                         gggTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGc                                                                   >  2:381375/1‑111 (MQ=255)                                                          ggTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACt                                                                                                             <  2:239348/68‑1 (MQ=255)                                                          ggTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACt                                                                                                             >  1:239348/1‑68 (MQ=255)                                                               ggTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCaa                                        >  2:121180/1‑132 (MQ=255)                                                               ggTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCaa                                        <  1:121180/132‑1 (MQ=255)                                                                        ccAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGAc                                                             <  1:364105/102‑1 (MQ=255)                                                                        ccAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGAc                                                             >  2:364105/1‑102 (MQ=255)                                                                                                   gagagCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAATGACACATCAACGCCGGATTTATTCCTTATAAAGCaaa  <  2:36417/134‑1 (MQ=255)                                                                                                   gagagCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGAGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAATGACACATCAACGCCGGATTTATTCCTTATAAAGCaaa  >  1:36417/1‑134 (MQ=255)                                                                                                             |                                                                                                                            CTGGCTTTCCCAGACGTCGTCATAGTCATTATGGTCCCTGCTTTTGCTCTTGTTATGGGTAGGGTGCAGTGCCAGGGACACTTCACCGCTTAACCATAGAGAGCGAAAACAGGGCTCAATTGACTGGTTCGGACATCAAATGGAGTGAGGCGGACATATCCCTGGGCTCCGACGTTTCATGACAACCTTGCCAATGACACATCAACGCCGGATTTATTCCTTATAAAGCAAA  >  NC_002947/6117750‑6117981

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.