| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4860676 | 23 (1.220) | 3 (0.170) | 3/236 | NT | 12.5% | coding (419/2331 nt) | ligA | DNA ligase |
| ? | NC_002947 | = 4860710 | 20 (1.110) | coding (385/2331 nt) | ligA | DNA ligase | |||||
ACCTCCAGCACTGCCGGCCAGCCCTTACCCTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCGGCTTCTTCGAAGGCGTTGCCCAGG > NC_002947/4860589‑4860855 | aCCTCCAGCACTGCCGGCCAGCCCTTACCCTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACg > 2:270158/1‑150 (MQ=255) ccAGCCCTTACCCTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCtt < 1:120230/150‑1 (MQ=255) ccAGCCCTTACCCTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCtt < 2:27115/150‑1 (MQ=255) cAGCCCTTACCCTGCAACTTGCGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTGCAGCAGGCTCACGGCCAGGCCATCGAGCTTg > 2:167875/1‑150 (MQ=255) aCCCTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCa > 2:3300/1‑150 (MQ=255) cTGCAACTTGAGCTGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTg > 2:127103/1‑139 (MQ=255) cTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTg < 1:127042/139‑1 (MQ=255) cTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTg > 2:127042/1‑139 (MQ=255) cTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTg < 1:127103/139‑1 (MQ=255) gATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGcc > 1:282156/1‑150 (MQ=255) gTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAgg < 1:270158/150‑1 (MQ=255) gTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTgg < 1:404138/104‑1 (MQ=255) gTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTgg > 2:404138/1‑104 (MQ=255) ttCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCAGTAGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTgg < 1:335135/89‑1 (MQ=255) ttCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCAGTAGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTgg > 2:335135/1‑89 (MQ=255) ccAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGctggcgaaaacatcagcgccaacgtacgcaccgtgcgcaacatcccgctcaagttgcagggtaagggctggccggccgtgctggaggtgcgcggcgaggtgcacatgagcaa < 2:496954‑M2/150‑113 (MQ=255) cAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCAc < 1:3300/150‑1 (MQ=255) gtggtgCCGTCGCCACGGGTGGCGCCCTGCACCAGctggcgaagacatcagcgccaacgtacgcaccgtgcgcaacatcccgctcaagtt > 1:66853‑M2/1‑35 (MQ=255) gtggtgCCGTCGCCACGGGTGGCGCCCTGCACCAGctggcgaagacatcagcgccaacgtacgcaccgtgcgcaacatcccgctcaagtt < 2:66853‑M2/90‑56 (MQ=255) ccGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCg > 2:429334/1‑150 (MQ=255) ccACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCGGcgtct > 1:405135/1‑150 (MQ=255) aCGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCGGCttcttc > 1:493882/1‑150 (MQ=255) gTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCGGCTTCTTCGAAg < 1:34703/150‑1 (MQ=255) aCCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCGGCTTCTTCGAAGGCGTTGCCCAgg < 2:282156/150‑1 (MQ=255) | ACCTCCAGCACTGCCGGCCAGCCCTTACCCTGCAACTTGAGCGGGATGTTGCGCACGGTGCGTACGTTGGCGCTGATGTCTTCGCCAGTGGTGCCGTCGCCACGGGTGGCGCCCTGCACCAGCTGGCCGTCGCGGTACAGCAGGCTCACGGCCAGGCCATCGAGCTTGGGTTCGCAGCTGTAGTCGACCGCGCCCGGCTGATCGAGGCCTTCTACCACGCGACGGCCGAACTCACGCAGGTCGGCTTCTTCGAAGGCGTTGCCCAGG > NC_002947/4860589‑4860855 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |