New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5957953 =	18 (0.960)	4 (0.230)	4/230	NT	18.3%	coding (1301/2856 nt)	cyaA	adenylate cyclase
	?	NC_002947	5957991 =	19 (1.080)					coding (1339/2856 nt)	cyaA	adenylate cyclase

GTGAGCTGGTGGCCGAGCTTAACCTCAGTTATCGCTTCCTCAGCCAGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAACCTGAGCACCCATGAGGTACAGCACT  >  NC_002947/5957848‑5958135                                                                                                                                                |                                                                                                                                                 ctcccagtggtagctgcccggctccttgcggttgggtgcctggaccagcgtcaaggtgtcttcggcgaggtcaggggcgatgccggggttaatcacttcgaccttGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAgg                                                                                                                                               <  2:331532‑M1/42‑1 (MQ=255) ctcccagtggtagctgcccggctccttgcggttgggtgcctggaccagcgtcaaggtgtcttcggcgaggtcaggggcgatgccggggttaatcacttcgaccttGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAgg                                                                                                                                               >  1:331532‑M1/106‑147 (MQ=255)     gCTGGTGGCCGAGCTTAACCTCAGTTATCGCTTCCTCAGCCAGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGt                                                                                                                                        <  1:192936/150‑1 (MQ=255)                        cTCAGTCATCGCTTACTCACCCAGCTCGCCCGCACTCAGAACGCAAGCAGCCGCGCCGACCAGCGCGACCTGAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCCCCGGCCAGGTCGAAGTGATTCACCCCGGCATcccc                                                                                                                     >  2:246879/1‑150 (MQ=255)                                       cTCAGCCAGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGaa                                                                                                      <  2:72755/150‑1 (MQ=255)                                       cTCAGCCAGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGaa                                                                                                      <  2:278522/150‑1 (MQ=255)                                              aGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACAccc                                                                                               >  1:171188/1‑150 (MQ=255)                                              aGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACAccc                                                                                               <  1:207962/150‑1 (MQ=255)                                                           ccAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCa                                                                                  >  1:75466/1‑150 (MQ=255)                                                                  gCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTg                                                                                       >  1:388402/1‑138 (MQ=255)                                                                  gCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTg                                                                                       <  2:388402/138‑1 (MQ=255)                                                                           cgcgCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAg                                                                  <  2:75466/150‑1 (MQ=255)                                                                              gcCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAg                                                               >  2:100785/1‑150 (MQ=255)                                                                                       cgcgACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGc                                                      <  1:100785/150‑1 (MQ=255)                                                                                            ccTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCa                                                 >  2:444576/1‑150 (MQ=255)                                                                                                      ccttgccggcgcggcgctcgaaggcggcgtacaggcgccggcAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCTTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAg                                          <  2:331532‑M2/105‑1 (MQ=255)                                                                                                      ccttgccggcgcggcgctcgaaggcggcgtacaggcgccggcAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCTTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAg                                          >  1:331532‑M2/43‑147 (MQ=255)                                                                                                      cTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTg                                       >  2:477130/1‑150 (MQ=255)                                                                                                           CCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTg                                                                                       <  2:489927‑M1/97‑1 (MQ=255)                                                                                                           CCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTg                                                                                       >  1:489927‑M1/1‑97 (MQ=255)                                                                                                            CGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGc                                 <  1:392212‑M1/150‑1 (MQ=255)                                                                                                             ggcgcggcgctcgaaggcggcgtacaggcgccggcAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCg                                                            <  2:326231‑M2/87‑1 (MQ=255)                                                                                                             ggcgcggcgctcgaaggcggcgtacaggcgccggcAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCg                                                            >  1:326231‑M2/36‑122 (MQ=255)                                                                                                             GGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCg                                >  1:477130‑M1/1‑150 (MQ=255)                                                                                                             GGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCg                                >  1:444576‑M1/1‑150 (MQ=255)                                                                                                                  cTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCAc                                                                             <  2:17166/100‑1 (MQ=255)                                                                                                                  cTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCAc                                                                             >  1:17166/1‑100 (MQ=255)                                                                                                                  cTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAAc                           >  1:352713/1‑150 (MQ=255)                                                                                                                          cgccTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAACCTGAGCAc                   >  1:59347/1‑150 (MQ=255)                                                                                                                          cgccTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGAAAGGCAGCTACGATGGGGTGCTTTACAGCGGCAACCTGAGCAc                   >  2:437747/1‑150 (MQ=255)                                                                                                                                    cgccgcgccgGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAACCTGAGCACCCATGAGGTa         <  2:59347/150‑1 (MQ=255)                                                                                                                                      ccgcgccgGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAACCTGAGCACCCATGAGGTACa       <  2:352713/150‑1 (MQ=255)                                                                                                                                           ccggcAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAACCTGAGCACCCATGAGGTACAGCACt  <  1:437747‑M2/145‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 GTGAGCTGGTGGCCGAGCTTAACCTCAGTTATCGCTTCCTCAGCCAGTTCGCCCGCACCCAGAACGCCAGCAGCCGCGCCGACCAGCGCGACCTCAATGTGCTGGGCCGGCGCCTGTACGCCGCCTTCGAGCGCCGCGCCGGCAAGGTCGAAGTGATTAACCCCGGCATCGCCCCTGACCTCGCCGAAGACACCCTGACGCTGGTCCAGGCACCCAACCGCAAGGAGCCGGGCAGCTACCACTGGGAGCTGTACAGCGGCAACCTGAGCACCCATGAGGTACAGCACT  >  NC_002947/5957848‑5958135

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.