| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2429960 | 25 (0.840) | 7 (0.310) | 7/214 | 1.8 | 24.5% | intergenic (+47/+66) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase |
| ? | NC_002947 | = 2429975 | 24 (1.050) | intergenic (+62/+51) | PP_2129/PP_2130 | hypothetical protein/lytic transglycosylase | |||||
CGTGAGCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2429788‑2429960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggtgaacccgctcctacaaGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCT < NC_002947/2429975‑2429829 CGTGAGCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTACCGGCCTCTT > 1:292479/1‑150 GCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGG < 2:175100/150‑1 TGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCGGTAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCT > 1:692201/1‑150 TGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGC < 2:67971/146‑1 TGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGC > 1:67971/1‑146 GAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTA < 2:692201/150‑1 CTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTC < 1:94895/142‑1 CTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTC > 2:94895/1‑142 GCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGG < 2:292479/150‑1 TTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTC > 1:164304/1‑150 CAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAG < 1:371242/134‑1 CAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTACCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAG > 2:371242/1‑134 CCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGA < 2:164304/150‑1 GATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGG < 1:303338/126‑1 GATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGG > 2:303338/1‑126 CGGCCTCTTCGCGGGTGAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAG > 1:382432/1‑150 CGCCGGGGACCCCGCTCCTACCAGGGTTTGAGCGGTCGTTGTAGGAGCGGCTTCACCCGCGAAGAGGCCTGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCT < 2:233542/150‑1 CGGGTCAACCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCact < 1:316128/150‑4 GTGACCCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGtaca < 1:186677/150‑5 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAG > 2:41560/1‑150 CCCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAAGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAG > 1:346006/1‑150 CCGCTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGC > 1:546791/1‑150 CTCCTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACG > 2:691751/1‑150 CTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCAC > 2:603860/1‑146 CTACAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCAC < 1:603860/146‑1 CAAGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCT > 1:457936/1‑150 CGTGAGCCGATGGCTACGCTGAAGACTTTCCGCGAAAAAGAAGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2429788‑2429960‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccggcctcttcgcgggtgaacccgctcctacaaGGGTTTGAGCGGTCGTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGCACAGGCAACACACCTATTCCAGGATTTCTACTTCCATCCCCACCTCCAGCCACCCACTGCCATCCACAGCCAGGTTCTGGCCGAACAGCACGTCGCCT < NC_002947/2429975‑2429829 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |