New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2429960	25 (0.840)	7 (0.310)	7/214	1.8	24.5%	intergenic (+47/+66)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase
	?	NC_002947	= 2429975	24 (1.050)					intergenic (+62/+51)	PP_2129/PP_2130	hypothetical protein/lytic transglycosylase

AGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTG  >  NC_002947/2429829‑2430121                                                                                                                                                   |                                                                                                                                                   aGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttg                                                                                                                                                 >  1:457936‑M2/1‑147 (MQ=255)       cGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggag                                                                                                                                           >  2:691751‑M2/1‑141 (MQ=255)        gTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtag                                                                                                                                              <  1:603860‑M2/146‑7 (MQ=255)        gTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtag                                                                                                                                              >  2:603860‑M2/1‑140 (MQ=255)          gCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcgg                                                                                                                                        >  1:546791‑M2/1‑138 (MQ=255)           cTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCTTACAACGACCGCTCAAACCCttgtaggagcggg                                                                                                                                       >  1:346006‑M2/1‑137 (MQ=255)           cTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcggg                                                                                                                                       >  2:41560‑M2/1‑137 (MQ=255)                tgtacagaaCCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcggggtcac                                                                                                                                  <  1:186677‑M2/146‑19 (MQ=255)                   agtgaacCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttgacccg                                                                                                                               <  1:316128‑M2/147‑22 (MQ=255)                     aGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCAGGCCTCTTCGCGGGTGAAGCCGCTCCTACAACGACCGCTCAAACCCtggtaggagcggggtccccggcg                                                                                                                             <  2:233542‑M2/150‑24 (MQ=255)                              cTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccg                                                                                                                    >  1:382432‑M2/1‑118 (MQ=255)                                               tggCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCa                                                                                                   <  2:501234/150‑1 (MQ=255)                                                            ggATGGAAGTAGAAATCCTGGAATAGGTGTATTGCCTGCGCCGGCCTCTTCGCGGGTGAAGCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATc                                                                                      <  1:295961/150‑1 (MQ=255)                                                                    ttAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAATCCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATAcc                                                                              <  1:21975/149‑1 (MQ=255)                                                                    gTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATAcc                                                                              >  1:257638/1‑150 (MQ=255)                                                                         aacccTGGAATAGGTGTGTCGCCTGCGCCGGCCTCTTCGCGGGTGACCCCCCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGTGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCa                                                                         <  1:233542/147‑1 (MQ=38)                                                                                           ttGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGc                                                       >  2:362361/1‑150 (MQ=255)                                                                                             gCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTg                                                     >  2:218558/1‑150 (MQ=255)                                                                                               cTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGGACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCg                                                   >  2:587134/1‑150 (MQ=255)                                                                                                tgtgCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCgg                                                  <  1:218558/150‑1 (MQ=255)                                                                                                       gCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                                      >  1:412322/1‑123 (MQ=255)                                                                                                       gCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGc                                                                      <  2:412322/123‑1 (MQ=255)                                                                                                        ccTCTACGCGGGTGAACACGCTCCTTCCCCACACGACCAAATCCTGATATGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCATTCATGCCAATCCACCAATGGCTGCGGTGAATTCa                                          <  2:257638/150‑1 (MQ=255)                                                                                                          tctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggcacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatccacagccagg                                        <  2:164304‑M2/150‑109 (MQ=255)                                                                                                          tctTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTAGAACAAATACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCAACACTGGCTGCGGTGAATTCAGc                                        >  1:224517/1‑150 (MQ=38)                                                                                                               gcgGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGACCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTAAATTTCTg                                   >  1:356204/1‑150 (MQ=255)                                                                                                                cgGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGc                                  <  2:204577/150‑1 (MQ=255)                                                                                                                     gAACCCGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggcacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatccacagccaggttctggccgaa                             >  1:164304‑M2/1‑31 (MQ=255)                                                                                                                     gAACCCGCTCCTACAACGACCGCTCAAACCCTTGTGATAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTa                             >  1:412074/1‑150 (MQ=255)                                                                                                                        cccGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggcacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatc                                                  >  2:303338‑M2/1‑28 (MQ=255)                                                                                                                        cccGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggcacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatc                                                  <  1:303338‑M2/126‑99 (MQ=255)                                                                                                                        cccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGAt                          >  2:184658/1‑150 (MQ=255)                                                                                                                         ccGCTCCTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggtacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatccacagccaggttctggccgaacagc                         <  2:292479‑M2/150‑124 (MQ=255)                                                                                                                         ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGt                                                 <  1:472112/126‑1 (MQ=255)                                                                                                                         ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGt                                                 >  2:472112/1‑126 (MQ=255)                                                                                                                         ccGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATc                         >  2:335961/1‑150 (MQ=255)                                                                                                                               cTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggtacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatccacagccaggttctg                                   >  2:371242‑M2/1‑21 (MQ=255)                                                                                                                               cTACAACGACCGCTCAAACCCttgtaggagcgggttcacccgcgaagaggccggtacaggcaacacacctattccaggatttctacttccatccccacctccagccacccactgccatccacagccaggttctg                                   <  1:371242‑M2/134‑114 (MQ=255)                                                                                                                                tACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTGAGCTTCTGCCCGTAGATCAcc                      >  2:151022/1‑146 (MQ=255)                                                                                                                                tACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCAcc                      <  1:151022/146‑1 (MQ=255)                                                                                                                                      gcccGCTCAAACCCTTGTAGGAGCGTGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACa            <  2:356204/148‑1 (MQ=255)                                                                                                                                                aCCCTTGTAGGAGCGGGTTCACCAGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTg  >  2:531014/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                   AGGCGACGTGCTGTTCGGCCAGAACCTGGCTGTGGATGGCAGTGGGTGGCTGGAGGTGGGGATGGAAGTAGAAATCCTGGAATAGGTGTGTTGCCTGTGCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAACGACCGCTCAAACCCTTGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGTACAGGCTCAACAGCAATCACATGTCATCGAAATACCGTTCATGCCAATCCACCAATGGCTGCGGTGAATTCAGCTTCTGCCCGTAGATCACCGAATACGACAGCACGTTCTG  >  NC_002947/2429829‑2430121

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.