| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2444395 = | 21 (0.700) | 5 (0.180) | 5/264 | 2.9 | 21.4% | coding (224/234 nt) | PP_2141 | hypothetical protein |
| ? | NC_002947 | 2444416 = | 17 (0.600) | intergenic (+11/+40) | PP_2141/sulA | hypothetical protein/cell division inhibitor SulA | |||||
TCTCTGGTAACCCTGGATTTCTCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCC > NC_002947/2444247‑2444542 | tctctGGTAACCCTGGATTTCTCGGAAGACGCAAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGtgtg < 2:112523/150‑1 (MQ=255) ctctGGTAACCCTGGATTTCTCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGtgc < 2:262492/150‑1 (MQ=255) acaccgtggtgagctggctgggcaacgtcaatgccgctgcacgccaacaactgctacgtgcagccagtgccggaaatgcacaaagcctgaacatccgcctcggctgatgttcaggctttgcctgtcacttcaaatagcctgatacgctgc < 2:201162‑M1/3‑1 (MQ=255) cccTGGATTTCTCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAg < 2:365774/150‑1 (MQ=255) aTTTCTCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTgca < 1:536487/150‑1 (MQ=255) aaGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCTTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTAt < 2:427025/150‑1 (MQ=255) cAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTa > 2:536809/1‑150 (MQ=255) gtTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGaa < 1:536809/150‑1 (MQ=255) cTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTCTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCGATTTGAAGTGa > 2:451506/1‑150 (MQ=255) tGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCa > 2:579105/1‑134 (MQ=255) tGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCa < 1:579105/134‑1 (MQ=255) catGGCCTTGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGt > 1:657546/3‑128 (MQ=255) aGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCa < 1:189022/150‑1 (MQ=255) gCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCagcagc < 2:260402/94‑1 (MQ=255) gCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCagcagc > 1:260402/1‑94 (MQ=255) cAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAg < 2:369239/150‑1 (MQ=255) aGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTc > 2:304085/1‑150 (MQ=255) gcgcgcgcGAGCGTGGACAATGGGCGCGTCTGGTGCACAGAGTGTGCCGCAGCGAATCAGGCAATTTGAAATGCCAGGCAACGCCTAGACATCAGCCGAGGCCGATGTTCAGGCCTTGTGCGTTTCCGGCACTGGCTGCACGTAACAgtg > 2:312154/1‑149 (MQ=255) gCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAgtt < 2:561903/150‑1 (MQ=255) tCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCGGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGc < 1:554831/150‑1 (MQ=255) aGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTg > 1:631140/1‑150 (MQ=255) cttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGc > 2:628316‑M1/21‑86 (MQ=255) cttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGc < 1:628316‑M1/66‑1 (MQ=255) ttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTtgt > 1:59187‑M1/20‑108 (MQ=255) ttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTtgt < 2:59187‑M1/89‑1 (MQ=255) gcgTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGtt > 1:201162/1‑150 (MQ=255) gcTGCTGCACTGAGTGTGCAGCAACGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCATGCTTTGTGCATTTCGGGCACTAGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGcc < 1:320076‑M1/148‑1 (MQ=255) | TCTCTGGTAACCCTGGATTTCTCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCC > NC_002947/2444247‑2444542 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |