New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2444395 =	21 (0.700)	5 (0.180)	5/264	2.9	21.4%	coding (224/234 nt)	PP_2141	hypothetical protein
	?	NC_002947	2444416 =	17 (0.600)					intergenic (+11/+40)	PP_2141/sulA	hypothetical protein/cell division inhibitor SulA

TCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCCCAGCCAGCTCACCACGGTGT  >  NC_002947/2444268‑2444562                                                                                                                                                     |                                                                                                                                                   ggcaacgtcaatgccgctgcacgccaacaactgctacgtgcagctagtgcccgaaatgcacaaagcatgaacatccgcctcggctgatgttcaggctttgcctgtcacttcaaatagcctgatacgttgctgcacactcagtgcagcagc                                                                                                                                                   <  1:320076‑M2/2‑1 (MQ=255)     aaGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCTTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTAt                                                                                                                                               <  2:427025/150‑1 (MQ=255)            cAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTa                                                                                                                                        >  2:536809/1‑150 (MQ=255)                  gtTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGaa                                                                                                                                  <  1:536809/150‑1 (MQ=255)                      cTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTCTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCGATTTGAAGTGa                                                                                                                              >  2:451506/1‑150 (MQ=255)                       tGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCa                                                                                                                                             >  2:579105/1‑134 (MQ=255)                       tGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCa                                                                                                                                             <  1:579105/134‑1 (MQ=255)                                          catGGCCTTGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGt                                                                                                                                >  1:657546/3‑128 (MQ=255)                                          aGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCa                                                                                                          <  1:189022/150‑1 (MQ=255)                                                         gCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCagcagc                                                                                                                                                   >  1:260402/1‑94 (MQ=255)                                                         gCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCagcagc                                                                                                                                                   <  2:260402/94‑1 (MQ=255)                                                            cAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAg                                                                                        <  2:369239/150‑1 (MQ=255)                                                            acaaagcctgaacatccgcctcggctgatgttcaggctttgcctgtcacttcaaatagcctgatacgctgctgcactgagtgtgcagcaGCGTATCAGGCTATTTGaa                                                                                                                                  >  1:59187‑M2/90‑108 (MQ=255)                                                            acaaagcctgaacatccgcctcggctgatgttcaggctttgcctgtcacttcaaatagcctgatacgctgctgcactgagtgtgcagcaGCGTATCAGGCTATTTGaa                                                                                                                                  <  2:59187‑M2/19‑1 (MQ=255)                                                                          aGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTc                                                                          >  2:304085/1‑150 (MQ=255)                                                                                   gctgatgttcaggctttgcctgtcacttcaaatagcctgatacgctgctgcactgagtgtgcagcaGCGTATCAGGCTATTTGAAg                                                                                                                                 <  1:628316‑M2/20‑1 (MQ=255)                                                                                   gctgatgttcaggctttgcctgtcacttcaaatagcctgatacgctgctgcactgagtgtgcagcaGCGTATCAGGCTATTTGAAg                                                                                                                                 >  2:628316‑M2/67‑86 (MQ=255)                                                                                                  gcgcgcgcGAGCGTGGACAATGGGCGCGTCTGGTGCACAGAGTGTGCCGCAGCGAATCAGGCAATTTGAAATGCCAGGCAACGCCTAGACATCAGCCGAGGCCGATGTTCAGGCCTTGTGCGTTTCCGGCACTGGCTGCACGTAACAgtg                                                  >  2:312154/1‑149 (MQ=255)                                                                                                  gCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAgtt                                                  <  2:561903/150‑1 (MQ=255)                                                                                                        tCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCGGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGc                                            <  1:554831/150‑1 (MQ=255)                                                                                                           aGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTg                                         >  1:631140/1‑150 (MQ=255)                                                                                                            cttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGc                                                                                                        >  2:628316‑M1/21‑86 (MQ=255)                                                                                                            cttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGc                                                                                                        <  1:628316‑M1/66‑1 (MQ=255)                                                                                                             ttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTtgt                                                                                 >  1:59187‑M1/20‑108 (MQ=255)                                                                                                             ttcaaatagcctgatacgcTGCTGCACACTCAGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTtgt                                                                                 <  2:59187‑M1/89‑1 (MQ=255)                                                                                                                           gcgTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGtt                         >  1:201162/1‑150 (MQ=255)                                                                                                                              gcTGCTGCACTGAGTGTGCAGCAACGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCATGCTTTGTGCATTTCGGGCACTAGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGcc                      <  1:320076‑M1/148‑1 (MQ=255)                                                                                                                                   TGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCccagcc                 >  1:304085‑M1/1‑150 (MQ=255)                                                                                                                                      ACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGTATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCCcagccagc              <  2:358915‑M1/150‑1 (MQ=255)                                                                                                                                                  gcaGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCCCAGCCAGCTCACCACGgtgt  <  2:201162‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TCGGAAGACGCCAAGGTGTTCCTGCAGGGTCAGCATGTGGAAGTGGCCAAGGCCATGCTCAGTGTGGGCGTGCAGATGGCCGGTCGCCTGATGGATGGCGAGCTCGAGCGTGATGAAGGGCCGCGTGTGCTGCACTGAGTGTGCAGCAGCGTATCAGGCTATTTGAAGTGACAGGCAAAGCCTGAACATCAGCCGAGGCGGATGTTCAGGCTTTGTGCATTTCCGGCACTGGCTGCACGTAGCAGTTGTTGGCGTGCAGCGGCATTGACGTTGCCCAGCCAGCTCACCACGGTGT  >  NC_002947/2444268‑2444562

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.