New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4055050 =	26 (0.870)	7 (0.240)	6/270	2.7	21.2%	coding (237/393 nt)	PP_3574	hypothetical protein
	?	NC_002947	4055078 =	27 (0.940)					coding (265/393 nt)	PP_3574	hypothetical protein

CGGCCAGGTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCA  >  NC_002947/4054903‑4055199                                                                                                                                                    |                                                                                                                                                      cgccattcaggactgcggtcattgctgatcgggaaccacggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtacac                                                                                                                                                     <  1:3014‑M1/3‑1 (MQ=255)                   tcattgctgatcgggaaccacggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtaCACCGACCCGCGCTTCCGCGa                                                                                                                                   <  2:256653‑M1/21‑1 (MQ=255)                    ttCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAg                                                                                                                                  >  2:318526/1‑150 (MQ=255)                         ctgatcgggaaccacggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtaCACCGACCCGCGCTTCCGCGAGCCGgt                                                                                                                             >  2:124517‑M1/124‑150 (MQ=255)                            cAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGCCTCTCCCCGACATCACCGACCCGCGCTTCCGCGAGCCGGTGTa                                                                                                                          >  2:169157/1‑150 (MQ=255)                                   gtggGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAaggag                                                                                                                   <  1:202040/150‑1 (MQ=255)                                       gCCTGGGTGACCCGCTCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGATCCGGTGTACAAGGAGGTgg                                                                                                               <  2:318157/150‑1 (MQ=255)                                         cTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGc                                                                                                             >  1:61317/1‑150 (MQ=255)                                           gggTGACCCGCGCGCACAATCCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGACGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCaa                                                                                                           <  2:465687/150‑1 (MQ=255)                                                    gatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtaCACCGACCCGCGCTTCCGCGAGCCGgt                                                                                                                             >  2:675887‑M1/97‑123 (MQ=255)                                                    gatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtaCACCGACCCGCGCTTCCGCGAGCCGgt                                                                                                                             <  1:675887‑M1/27‑1 (MQ=255)                                                               gcGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGAGCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTcc                                                                                       <  1:683008/149‑1 (MQ=255)                                                                cGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTccc                                                                                      <  2:61317/150‑1 (MQ=255)                                                                         gATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCgtg                                                                                           <  1:135675/136‑1 (MQ=255)                                                                         gATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCgtg                                                                                           >  2:135675/1‑136 (MQ=255)                                                                               gaaCGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGtt                                                                       >  2:636821/1‑150 (MQ=255)                                                                                aaCGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTtg                                                                      <  1:318526/150‑1 (MQ=255)                                                                                   ttCAAGCAGTTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCAACGGGAtggtg                                                                   >  1:287676/2‑150 (MQ=255)                                                                                   ttCAAGCAGTTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCAGCGCTTCCGCGAGCGGATGTAAAAGAAGGTGGGCAGAGGGCTCAATAGCGTGTTACCGATTTCCACCGGGTtggtg                                                                   >  2:682371/2‑150 (MQ=255)                                                                                   gTCAAGCCACTGCTTGAACAAGCCCTCCCCGACCTGTCGCACATCGTCAAGACCCCCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTtggtg                                                                   <  2:5971/150‑1 (MQ=255)                                                                                                    agaagCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCa                                                  >  2:3014/1‑150 (MQ=255)                                                                                                          cGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGCCGCACTCAGGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGTTGTTGTACGGGATGGCCCAGGCCGa                                            >  1:12858/1‑150 (MQ=255)                                                                                                            gCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                          <  1:636821/150‑1 (MQ=255)                                                                                                              tCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCAAGAGGTTGTTGTTGGCCGTGTTGGCCCAGGCCGAGTgg                                        >  2:505856/1‑150 (MQ=255)                                                                                                                         gCACATCGTCAAGACCACCACCTACATCACCGACCCGAGCTTGAAGCCGGCGATGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGAt                             >  1:303068/1‑150 (MQ=255)                                                                                                                           acaTCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCg                           >  2:275572/1‑150 (MQ=255)                                                                                                                                gTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTg                      >  2:655016/1‑150 (MQ=255)                                                                                                                                gTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTg                      >  1:344736/1‑150 (MQ=255)                                                                                                                                 tCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGa                     >  2:179443/1‑150 (MQ=255)                                                                                                                                   aaGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATc                   >  2:425044/1‑150 (MQ=255)                                                                                                                                       ccacctccttgtaCACCGGCTCGCGGAAGCGCGGGTCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCg               <  1:256653‑M1/137‑1 (MQ=255)                                                                                                                                        cacctccttgtaCACCGGCTCGCGGAAGCGCGGGTCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                          <  2:484168‑M1/110‑1 (MQ=255)                                                                                                                                        cacctccttgtaCACCGGCTCGCGGAAGCGCGGGTCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                          >  1:484168‑M1/13‑122 (MQ=255)                                                                                                                                             ccTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCAGATTGGGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGttt         >  1:470997/1‑149 (MQ=255)                                                                                                                                                    CACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCa  >  1:425044‑M1/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                      CGGCCAGGTCGGTACCGACTTCGAAGGCAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCA  >  NC_002947/4054903‑4055199

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.