New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4055050 =	26 (0.870)	7 (0.240)	6/270	2.7	21.2%	coding (237/393 nt)	PP_3574	hypothetical protein
	?	NC_002947	4055078 =	27 (0.940)					coding (265/393 nt)	PP_3574	hypothetical protein

CAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCG  >  NC_002947/4054930‑4055224                                                                                                                                                     |                                                                                                                                                   cAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGCCTCTCCCCGACATCACCGACCCGCGCTTCCGCGAGCCGGTGTa                                                                                                                                                   >  2:169157/1‑150 (MQ=255)        gtggGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAaggag                                                                                                                                            <  1:202040/150‑1 (MQ=255)            gCCTGGGTGACCCGCTCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGATCCGGTGTACAAGGAGGTgg                                                                                                                                        <  2:318157/150‑1 (MQ=255)            cggcgatcacgtcgatctccatcagccactcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtacaccgacccgcgcttccgcgagccggtgTACAAGGAGGTgg                                                                                                                                        <  1:256653‑M2/13‑1 (MQ=255)              cTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGc                                                                                                                                      >  1:61317/1‑150 (MQ=255)                gggTGACCCGCGCGCACAATCCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGACGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCaa                                                                                                                                    <  2:465687/150‑1 (MQ=255)                                    gcGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGAGCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTcc                                                                                                                <  1:683008/149‑1 (MQ=255)                                     cGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTccc                                                                                                               <  2:61317/150‑1 (MQ=255)                                       actcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtacaccgacccgcgcttccgcgagccggtgTACAAGGAGGTg                                                                                                                                         <  2:484168‑M2/12‑1 (MQ=255)                                       actcggcctgggccaacccggccaccaccaacccggtggaaatcgggaacacgcccttgagccacttgcccacctccttgtacaccgacccgcgcttccgcgagccggtgTACAAGGAGGTg                                                                                                                                         >  1:484168‑M2/111‑122 (MQ=255)                                              gATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCgtg                                                                                                                    <  1:135675/136‑1 (MQ=255)                                              gATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCgtg                                                                                                                    >  2:135675/1‑136 (MQ=255)                                                    gaaCGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGtt                                                                                                >  2:636821/1‑150 (MQ=255)                                                     aaCGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTtg                                                                                               <  1:318526/150‑1 (MQ=255)                                                        ttCAAGCAGTTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCAACGGGAtggtg                                                                                            >  1:287676/2‑150 (MQ=255)                                                        ttCAAGCAGTTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCAGCGCTTCCGCGAGCGGATGTAAAAGAAGGTGGGCAGAGGGCTCAATAGCGTGTTACCGATTTCCACCGGGTtggtg                                                                                            >  2:682371/2‑150 (MQ=255)                                                        gTCAAGCCACTGCTTGAACAAGCCCTCCCCGACCTGTCGCACATCGTCAAGACCCCCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTtggtg                                                                                            <  2:5971/150‑1 (MQ=255)                                                                         agaagCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCa                                                                           >  2:3014/1‑150 (MQ=255)                                                                               cGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGCCGCACTCAGGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGTTGTTGTACGGGATGGCCCAGGCCGa                                                                     >  1:12858/1‑150 (MQ=255)                                                                                 gCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                                                   <  1:636821/150‑1 (MQ=255)                                                                                   tCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCAAGAGGTTGTTGTTGGCCGTGTTGGCCCAGGCCGAGTgg                                                                 >  2:505856/1‑150 (MQ=255)                                                                                              gCACATCGTCAAGACCACCACCTACATCACCGACCCGAGCTTGAAGCCGGCGATGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGAt                                                      >  1:303068/1‑150 (MQ=255)                                                                                                acaTCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCg                                                    >  2:275572/1‑150 (MQ=255)                                                                                                     gTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTg                                               >  2:655016/1‑150 (MQ=255)                                                                                                     gTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTg                                               >  1:344736/1‑150 (MQ=255)                                                                                                      tCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGa                                              >  2:179443/1‑150 (MQ=255)                                                                                                        aaGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATc                                            >  2:425044/1‑150 (MQ=255)                                                                                                            ccacctccttgtaCACCGGCTCGCGGAAGCGCGGGTCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCg                                        <  1:256653‑M1/137‑1 (MQ=255)                                                                                                             cacctccttgtaCACCGGCTCGCGGAAGCGCGGGTCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                                                   >  1:484168‑M1/13‑122 (MQ=255)                                                                                                             cacctccttgtaCACCGGCTCGCGGAAGCGCGGGTCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGt                                                                   <  2:484168‑M1/110‑1 (MQ=255)                                                                                                                  ccTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCAGATTGGGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGttt                                  >  1:470997/1‑149 (MQ=255)                                                                                                                         CACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCa                           >  1:425044‑M1/1‑150 (MQ=255)                                                                                                                          accggctcgcggaagcgcgggtcggtgTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATc                                                     <  1:675887‑M2/96‑1 (MQ=255)                                                                                                                          accggctcgcggaagcgcgggtcggtgTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATc                                                     >  2:675887‑M2/28‑123 (MQ=255)                                                                                                                          accggctcgcggaagcgcgggtcggtgTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAg                          >  2:124517‑M2/28‑150 (MQ=255)                                                                                                                          ACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAg                          <  2:601783‑M1/150‑1 (MQ=255)                                                                                                                           CCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGc                         >  1:601783‑M1/1‑150 (MQ=255)                                                                                                                                tcgcggaagcgcgggtcggtgTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGa                    <  2:256653‑M2/129‑1 (MQ=255)                                                                                                                                ccGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGa                    >  2:393415/1‑150 (MQ=255)                                                                                                                                  gcgcTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGAcc                  <  1:393415/150‑1 (MQ=255)                                                                                                                                                  gtgTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGTCCTGAATGGCg  <  1:3014‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   CAAGCTGGTGGGCCTGGGTGACCCGCGCGCACAAACCGAACAGGCGATGAAGAACGTCAAGCAACTGCTTGAAGAAGCCGGCTCGGACCTGTCGCACATCGTCAAGACCACCACCTACATCACCGACCCGCGCTTCCGCGAGCCGGTGTACAAGGAGGTGGGCAAGTGGCTCAAGGGCGTGTTCCCGATTTCCACCGGGTTGGTGGTGGCCGGGTTGGCCCAGGCCGAGTGGCTGATGGAGATCGACGTGATCGCCGTGGTTCCCGATCAGCAATGACCGCAGGCCTGAATGGCG  >  NC_002947/4054930‑4055224

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.