| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 186031 = | 35 (0.780) | 7 (0.170) | 7/232 | NT | 18.0% | coding (108/522 nt) | PP_0162 | ECF family RNA polymerase sigma‑70 factor |
| ? | NC_002947 | 186060 = | 31 (0.730) | coding (79/522 nt) | PP_0162 | ECF family RNA polymerase sigma‑70 factor | |||||
CTTGCTCCGCCAACAATGAGACTAATTATCATTAACGTCCATTGATGCCGGCGCCCTCCTCCATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTGGCTGCGTAGCAAGCTCGGCAACGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/186182‑186031‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCATCAGTTAAC > NC_002947/186060‑186207 CTTGCTCCGCCAACAATGAGACTAATTATCATTAACGTCCATTGATGCCGGCGCCCTCCTCCATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACATGGCTGCGTAGCAAGCTCGGCACCGCAG > 1:1109380/1‑150 TTGCTCCGCCAACAATGAGACTAATTATCATTAACGTCCATTGATGCCGGCGCCCTCCTCCATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTGGCTGCGTAGCAAGCTCGGCAACGCAGC > 1:102600/1‑150 ACCTGGCTGCGTAGCAAGCTCGGCAACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAA < 1:237104/125‑1 ACCTGGCTGCGTAGCAAGCTCGGCAACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAA > 2:237104/1‑125 CTGGCTGCGTAGCAAGCTCGGCAACGCAGCCGGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGAC > 1:336299/1‑118 CTGGCTGCGTAGCAAGCTCGGCAACGCAGCCGGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGAC < 2:336299/118‑1 TGGCTGCGTAGCAAGCTCGGCAACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGC > 1:398396/1‑150 TGCGTAGCAAGCTCGGCAACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGG < 1:115663/84‑1 TGCGTAGCAAGCTCGGCAACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGG > 2:115663/1‑84 CGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTT < 1:834378/46‑1 CGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTT > 2:834378/1‑46 CCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCATCAGTTAAC < 2:1093904/150‑1 CTTGCTCCGCCAACAATGAGACTAATTATCATTAACGTCCATTGATGCCGGCGCCCTCCTCCATGCCCAGCAACGATTCCGTGCAAACGCTCTACAGTGACCACCACGGCTGGTTGCATACCTGGCTGCGTAGCAAGCTCGGCAACGCAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/186182‑186031‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCATCAGTTAAC > NC_002947/186060‑186207 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |