New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	186031 =	35 (0.780)	7 (0.170)	7/232	NT	18.0%	coding (108/522 nt)	PP_0162	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	186060 =	31 (0.730)					coding (79/522 nt)	PP_0162	ECF family RNA polymerase sigma‑70 factor

ATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCATCAGTTAAC  >  NC_002947/185911‑186207                                                                                                                                                      |                                                                                                                                                    gctccgccaacaatgagactaattatcattaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCAGCCa                                                                                                                                                     >  1:398396‑M1/121‑150 (MQ=255)     gcgatcACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTa                                                                                                                                                 >  2:827394/2‑150 (MQ=255)        atcACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGc                                                                                                                                              >  2:1160024/1‑150 (MQ=255)               gCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGc                                                                                                                                       >  1:1089177/1‑150 (MQ=255)                    cgcgCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                                                    >  2:754098/1‑132 (MQ=255)                    cgcgCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                                                    <  1:754098/132‑1 (MQ=255)                         tACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAACTCAGGAAGCGCAAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTc                                                                                                                             >  2:347330/1‑150 (MQ=255)                             ttaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGt                                                                                                                                                  >  2:237104‑M1/93‑125 (MQ=255)                             ttaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGt                                                                                                                                                  <  1:237104‑M1/33‑1 (MQ=255)                                  gtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacccGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                                                    <  2:336299‑M1/31‑1 (MQ=255)                                  gtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacccGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                                                    >  1:336299‑M1/88‑118 (MQ=255)                                           ccTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCAc                                                                                                           >  2:946001/1‑150 (MQ=255)                                               ggCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGaa                                                                                                       >  2:102600/1‑150 (MQ=255)                                                gcgcATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAAt                                                                                                      >  1:225533/1‑150 (MQ=255)                                                        ggCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTg                                                                                              >  2:1109380/2‑150 (MQ=255)                                                              aaTTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATg                                                                                        >  2:369139/1‑150 (MQ=255)                                                                ttGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATgga                                                                                      >  2:494549/1‑150 (MQ=255)                                                                      acgacgCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAggg                                                                                >  1:882631/1‑150 (MQ=255)                                                                           gCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                                                           >  1:1093904/1‑150 (MQ=255)                                                                                   aaGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                                                           >  1:458195/1‑142 (MQ=255)                                                                                   aaGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                                                           <  2:458195/142‑1 (MQ=255)                                                                                   aaGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAAt                                                                   <  1:827394/150‑1 (MQ=255)                                                                                    aGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCTCGGCAAAGGCGCGGGGCTTGTAGGGGGGCGCCGGCATCAATg                                                                  >  2:918409/1‑150 (MQ=255)                                                                                       ggACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGAc                                                               <  1:369139/150‑1 (MQ=255)                                                                                        gACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCgtggtg                                                                                                                                <  1:1009145/84‑1 (MQ=255)                                                                                        gACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCgtggtg                                                                                                                                >  2:1009145/1‑84 (MQ=255)                                                                                           gAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTa                                                           >  2:235350/1‑150 (MQ=255)                                                                                             aGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAAt                                                         <  2:225533/150‑1 (MQ=255)                                                                                                  tCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATaa                                                    >  1:831647/1‑150 (MQ=255)                                                                                                  tCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATaa                                                    <  1:1160024/150‑1 (MQ=255)                                                                                                              tCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCAttg                                        >  1:153334/1‑150 (MQ=255)                                                                                                                    gCATCGGGTGCGTTGCAGAGCTGGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCg                                  <  1:61546/150‑1 (MQ=255)                                                                                                                     cATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCgg                                 >  1:651694/1‑150 (MQ=255)                                                                                                                     acctggctgcgtagcaagctcggcaacgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTaa                                                          <  1:237104‑M2/92‑1 (MQ=255)                                                                                                                     acctggctgcgtagcaagctcggcaacgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTaa                                                          >  2:237104‑M2/34‑125 (MQ=255)                                                                                                                      aTCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGa                                <  2:1089177/150‑1 (MQ=255)                                                                                                                       ctggctgcgtagcaagctcggcaacgcagccGGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGAc                                                               >  1:336299‑M2/32‑118 (MQ=255)                                                                                                                       ctggctgcgtagcaagctcggcaacgcagccGGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGAc                                                               <  2:336299‑M2/87‑1 (MQ=255)                                                                                                                        tggctgcgtagcaagctcggcaacgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGc                              >  1:398396‑M2/31‑150 (MQ=255)                                                                                                                        cGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGc                              <  1:235350/150‑1 (MQ=255)                                                                                                                          GCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCaa                            >  1:102600‑M1/1‑150 (MQ=255)                                                                                                                           CTGCGGTGCCGAGCTTGCTACGCAGCCATGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAg                           >  1:1109380‑M1/1‑150 (MQ=255)                                                                                                                            tgcgtagcaagctcggcaacgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTggg                                                                                            <  1:115663‑M2/58‑1 (MQ=255)                                                                                                                            tgcgtagcaagctcggcaacgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTggg                                                                                            >  2:115663‑M2/27‑84 (MQ=255)                                                                                                                                  gCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCa                                           <  2:923848/127‑1 (MQ=255)                                                                                                                                  gCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCa                                           >  1:923848/1‑127 (MQ=255)                                                                                                                                     gAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTgg                                    <  2:22862/131‑1 (MQ=255)                                                                                                                                     gAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTgg                                    >  1:22862/1‑131 (MQ=255)                                                                                                                                        atctcTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAAc              <  2:311765/146‑1 (MQ=255)                                                                                                                                         ttGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                                                           <  2:707854/88‑1 (MQ=255)                                                                                                                                         ttGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                                                           >  1:707854/1‑88 (MQ=255)                                                                                                                                           gCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCa           >  2:984768/1‑150 (MQ=255)                                                                                                                                             tACGCAGCCAGGTATGCAACCAGCCGTGNTGGTCACTNTAGAGCGTTNGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCAGTGTTGGCGGAGCAAGATTAATTTGCAAccagat         >  1:311765/1‑146 (MQ=255)                                                                                                                                               cgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGttt                                                                                                               <  1:834378‑M2/39‑1 (MQ=255)                                                                                                                                               cgcagccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGttt                                                                                                               >  2:834378‑M2/8‑46 (MQ=255)                                                                                                                                                    ccAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCATCAGTTAAc  <  2:1093904‑M2/148‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                    ATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGCAAGATTAATTTGCAACCCATCAGTTAAC  >  NC_002947/185911‑186207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.