New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	186031 =	35 (0.780)	7 (0.170)	7/232	NT	18.0%	coding (108/522 nt)	PP_0162	ECF family RNA polymerase sigma‑70 factor
	?	NC_002947	186060 =	31 (0.730)					coding (79/522 nt)	PP_0162	ECF family RNA polymerase sigma‑70 factor

AGGCCCTGTGCAGTTCCTCGCGGCGCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGC  >  NC_002947/185883‑186179                                                                                                                                                     |                                                                                                                                                     gttaactgatgggttgcaaattaatcttgctccgccaacaatgagactaattatcattaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctgg                                                                                                                                                     <  2:1093904‑M1/2‑1 (MQ=255)           cAGTTCCTCGCGGCGCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGcc                                                                                                                                           <  1:999983/150‑1 (MQ=255)           cAGTTCCTCGCGGCGCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGcc                                                                                                                                           <  1:650878/150‑1 (MQ=255)               tCCTCGCGGCGCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGc                                                                                                                                       >  2:515613/1‑150 (MQ=255)                ccTCGCGGCGCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCt                                                                                                                                      <  2:412140/150‑1 (MQ=255)                      ggcgCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTAc                                                                                                                                <  1:515613/150‑1 (MQ=255)                             gctccgccaacaatgagactaattatcattaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCAGCCa                                                                                                                         >  1:398396‑M1/121‑150 (MQ=255)                                 gcgatcACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTa                                                                                                                     >  2:827394/2‑150 (MQ=255)                                    atcACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGc                                                                                                                  >  2:1160024/1‑150 (MQ=255)                                        ccAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGa                                                                                                                                         >  1:1030929/1‑123 (MQ=255)                                        ccAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGa                                                                                                                                         <  2:1030929/123‑1 (MQ=255)                                           gCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGc                                                                                                           >  1:1089177/1‑150 (MQ=255)                                              cACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAg                                                                                                                                        >  1:318960/1‑118 (MQ=255)                                              cACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAg                                                                                                                                        <  2:318960/118‑1 (MQ=255)                                                cgcgCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                        >  2:754098/1‑132 (MQ=255)                                                cgcgCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                        <  1:754098/132‑1 (MQ=255)                                                     tACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAACTCAGGAAGCGCAAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTc                                                                                                 >  2:347330/1‑150 (MQ=255)                                                         ttaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGt                                                                                                                      <  1:237104‑M1/33‑1 (MQ=255)                                                         ttaacgtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGt                                                                                                                      >  2:237104‑M1/93‑125 (MQ=255)                                                              gtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacccGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                        <  2:336299‑M1/31‑1 (MQ=255)                                                              gtccattgatgccggcgccctcctccatgcccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacccGGCTGCGTTGCCGAGCTTGCTACGCAGCCAg                                                                                                                        >  1:336299‑M1/88‑118 (MQ=255)                                                                       ccTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCAc                                                                               >  2:946001/1‑150 (MQ=255)                                                                           ggCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGaa                                                                           >  2:102600/1‑150 (MQ=255)                                                                            gcgcATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAAt                                                                          >  1:225533/1‑150 (MQ=255)                                                                                    ggCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTg                                                                  >  2:1109380/2‑150 (MQ=255)                                                                                          aaTTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATg                                                            >  2:369139/1‑150 (MQ=255)                                                                                           cccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCa                                                                                                                             >  2:115663‑M1/59‑84 (MQ=255)                                                                                           cccagcaacgattccgtgcaaacgctctacagtgaccaccacggctggttgcatacctGGCTGCGTTGCCGAGCTTGCTACGCa                                                                                                                             <  1:115663‑M1/26‑1 (MQ=255)                                                                                            ttGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATgga                                                          >  2:494549/1‑150 (MQ=255)                                                                                                  acgacgCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAggg                                                    >  1:882631/1‑150 (MQ=255)                                                                                                       gCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                               >  1:1093904/1‑150 (MQ=255)                                                                                                              aaacgctctacagtgaccaccacggctggttgcatacctGGCTGCg                                                                                                                                                >  2:834378‑M1/40‑46 (MQ=255)                                                                                                              aaacgctctacagtgaccaccacggctggttgcatacctGGCTGCg                                                                                                                                                <  1:834378‑M1/7‑1 (MQ=255)                                                                                                               aaGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                               >  1:458195/1‑142 (MQ=255)                                                                                                               aaGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCg                                               <  2:458195/142‑1 (MQ=255)                                                                                                               aaGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAAt                                       <  1:827394/150‑1 (MQ=255)                                                                                                                aGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCTCGGCAAAGGCGCGGGGCTTGTAGGGGGGCGCCGGCATCAATg                                      >  2:918409/1‑150 (MQ=255)                                                                                                                   ggACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGAc                                   <  1:369139/150‑1 (MQ=255)                                                                                                                    gACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCgtggtg                                                                                                    <  1:1009145/84‑1 (MQ=255)                                                                                                                    gACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCgtggtg                                                                                                    >  2:1009145/1‑84 (MQ=255)                                                                                                                       gAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTa                               >  2:235350/1‑150 (MQ=255)                                                                                                                         aGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAAt                             <  2:225533/150‑1 (MQ=255)                                                                                                                              tCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATaa                        >  1:831647/1‑150 (MQ=255)                                                                                                                              tCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATaa                        <  1:1160024/150‑1 (MQ=255)                                                                                                                                          tCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCAttg            >  1:153334/1‑150 (MQ=255)                                                                                                                                                gCATCGGGTGCGTTGCAGAGCTGGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCg      <  1:61546/150‑1 (MQ=255)                                                                                                                                                 cATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCgg     >  1:651694/1‑150 (MQ=255)                                                                                                                                                  aTCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGa    <  2:1089177/150‑1 (MQ=255)                                                                                                                                                    cGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGc  <  1:235350/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     AGGCCCTGTGCAGTTCCTCGCGGCGCCAATGATCGATCACCAGCCCACGCGCTACCGTGCGCAGGAAGGCCCTGGGCGCATTCAGCTGCAATTGTTCACGACGCTGTAGCAAGCGGACGAAGGTATCCTGGGCGAGGTCAGCCGCATCGGCTGCGTTGCCGAGCTTGCTACGCAGCCAGGTATGCAACCAGCCGTGGTGGTCACTGTAGAGCGTTTGCACGGAATCGTTGCTGGGCATGGAGGAGGGCGCCGGCATCAATGGACGTTAATGATAATTAGTCTCATTGTTGGCGGAGC  >  NC_002947/185883‑186179

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.