New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 219919	47 (1.040)	6 (0.140)	5/240	NT	11.0%	coding (25425/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 219942	52 (1.190)					coding (25448/26049 nt)	PP_0168	putative surface adhesion protein

GCCGGCAAGCCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/219767‑219919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcTGCAGGGCCTGGTAGCCCTCGCTGACGACACCGTTGAGGGTGATCAGGTCACCGAAGATGATGTCGTTGCCGTTACCACTATCAATGGTGTCGGCACCTGGCACCGTTGCTTCGGAGTGACCGAGAATCGCCTTGGCCAAATCGGACGG  <  NC_002947/219942‑219794                                                                                                                                                                                                                                                                                                                GCCGGCAAGCCACCGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTC                                                                                                                                                          <  1:268062/150‑1    GGCAAGCCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTC                                                                                                                                                       >  1:450738/1‑150                                                               CGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCTGCAGGGCCTGGTAGCCCTCGCTGACGA                                                                                                                           >  1:461963/1‑119                                                               CGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCTGCAGGGCCTGGTAGCCCTCGCTGACGA                                                                                                                           <  2:461963/119‑1                                                                      ACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCTGCAGGGCCTGGTAGCCCTCGCTGACGA                                                                                                                           >  1:372564/1‑112                                                                      ACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCTGCAGGGCCTGGTAGCCCTCGCTGACGA                                                                                                                           <  2:372564/112‑1                                                                                           ATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGCCCTGATCACCCTCAACGGTGTCGTCTGCAGGGCCTGGTAGCCCTCGCTGCCGACA                                                                                                                         >  1:359658/1‑93                                                                                           ATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCTGCAGGGCCTGGTAGCCCTCGCTGACGACA                                                                                                                         <  2:359658/93‑1                                                                                                                                                         CTGCAGGGCCTGGTAGCCCTCGCTGACGACACCGTTGAGGGTGATCAGGTCACCGAAGATGATGTCGTTGCCGTTACCACTATCAATGGTGTCGGCACCTGGCACCGTTGCTTCGGAGTGACCGAGAATCGCCTTGGCCAAATCGGACGG  <  1:43216/150‑1                                                                                                                                                                                                                                                                                                                GCCGGCAAGCCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/219767‑219919 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgtcTGCAGGGCCTGGTAGCCCTCGCTGACGACACCGTTGAGGGTGATCAGGTCACCGAAGATGATGTCGTTGCCGTTACCACTATCAATGGTGTCGGCACCTGGCACCGTTGCTTCGGAGTGACCGAGAATCGCCTTGGCCAAATCGGACGG  <  NC_002947/219942‑219794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.