New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 219919	47 (1.040)	6 (0.140)	5/240	NT	11.0%	coding (25425/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 219942	52 (1.190)					coding (25448/26049 nt)	PP_0168	putative surface adhesion protein

CCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGTGGCAATGGCAAT  >  NC_002947/219794‑220087                                                                                                                                                     |                                                                                                                                                  ccGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAg                                                                                                                                                  <  1:43216‑M2/150‑2 (MQ=255)         tttGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGacgtacgt                                                                                                                                          <  1:240800/150‑1 (MQ=255)          ttGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCACTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGtt                                                                                                                                         <  2:61278/150‑1 (MQ=255)              ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGcac                                                                                                                                     >  2:205062/1‑150 (MQ=255)              ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGcac                                                                                                                                     >  2:684327/1‑150 (MQ=255)                  ggCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGCCACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACagaa                                                                                                                                 <  2:823870/150‑1 (MQ=255)                     gATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATATTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAagag                                                                                                                              >  1:683733/1‑150 (MQ=255)                         ctcGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGgt                                                                                                                          <  1:135805/150‑1 (MQ=255)                             gTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGtt                                                                                                                                         <  1:785580/131‑1 (MQ=255)                             gTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGtt                                                                                                                                         >  2:785580/1‑131 (MQ=255)                                  tCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCTAGGGCTACCAGGCGCTGCAGACGTACGTTGGACAGAAGAGCGGTGTGGAAGTc                                                                                                                 >  2:968353/1‑150 (MQ=255)                                             ggTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTGAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCAc                                                                                                      <  2:450738/150‑1 (MQ=255)                                             ggTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCAc                                                                                                      >  2:313328/1‑150 (MQ=255)                                                gCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTAc                                                                                                   <  1:313328/150‑1 (MQ=255)                                                gCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGGCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTAc                                                                                                   <  1:684327/150‑1 (MQ=255)                                                      ttccGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGGCCTGCAGACGTACGTTGCACAGAAGAGGGGTGTTGAAGTCGGTGGTGTGACTACAAGCaa                                                                                             >  1:594659/3‑150 (MQ=255)                                                                   gATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTAc                                                                                <  1:1162268/150‑1 (MQ=255)                                                                        tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGtt                                                                                                                       <  2:1023460/106‑1 (MQ=255)                                                                        tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGtt                                                                                                                       >  1:1023460/1‑106 (MQ=255)                                                                        tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTc                                                                                                        <  1:56244/121‑1 (MQ=255)                                                                        tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTc                                                                                                        >  2:56244/1‑121 (MQ=255)                                                                          gTAACGGCAACGACATCATCTTCGGTGACCGGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTACAGACGTACGTTGCACAGAAGAGCGGAGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCAGCAGTACATCACCg                                                                         >  2:246719/1‑150 (MQ=255)                                                                           tgaCGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGa                                                                        >  1:645285/3‑150 (MQ=255)                                                                           tAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGa                                                                        >  1:619437/1‑150 (MQ=255)                                                                            aaCGGCAACGACATCATCTTCGGTGACCTGATCAGAAGCTCCGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAg                                                                       <  1:968353/150‑1 (MQ=255)                                                                            aaCGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAg                                                                       >  2:307797/1‑150 (MQ=255)                                                                              cGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTa                                                                                 <  1:1173/138‑1 (MQ=255)                                                                              cGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTa                                                                                 >  2:1173/1‑138 (MQ=255)                                                                                gCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACt                                                                   >  1:350974/1‑150 (MQ=255)                                                                                         tcatcTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGt                                                          >  1:1084543/1‑150 (MQ=255)                                                                                           atcTTCGGTGACCTGATCACCCTCCACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAACCGCGGTGTTGAAGTCGGTGCTGTGGCTACCAGGAAGGTGGACCAGTACATCACCGAGCACTACACCGAGTTc                                                        <  1:511200/150‑1 (MQ=255)                                                                                           atcTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTc                                                        <  1:307797/150‑1 (MQ=255)                                                                                              ttCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGat                                                     <  2:148658/150‑1 (MQ=255)                                                                                                  gTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATAtct                                                 >  1:1133832/1‑150 (MQ=255)                                                                                                    gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTc                                                                                                                 >  1:1080436/1‑84 (MQ=255)                                                                                                    gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTc                                                                                                                 <  2:1080436/84‑1 (MQ=255)                                                                                                     aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCa                                                                                                 >  2:1116112/1‑99 (MQ=255)                                                                                                     aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCa                                                                                                 <  1:1116112/99‑1 (MQ=255)                                                                                                     aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCg                                              <  1:205062/150‑1 (MQ=255)                                                                                                     aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCg                                              >  1:550975/1‑150 (MQ=255)                                                                                                       cTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACTATTATTGTTGATCCGTACACCACCGAGATCTACACCGAGTTCGATATCTCCGGt                                            <  2:43216/150‑1 (MQ=255)                                                                                                                cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGAc                                   <  2:619437/150‑1 (MQ=255)                                                                                                                  cAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACgg                                 <  1:299301/150‑1 (MQ=255)                                                                                                                      ggTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAAt                             <  1:453072/150‑1 (MQ=255)                                                                                                                        tgtCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaat                                                                                    <  2:359658‑M2/93‑64 (MQ=255)                                                                                                                        tgtCGGCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcagggcaccgaagatgatgtcgttgccgttaccactatcaat                                                                                    >  1:359658‑M2/1‑30 (MQ=255)                                                                                                                          tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcg                                                        >  1:461963‑M2/1‑28 (MQ=255)                                                                                                                          tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcg                                                        <  2:461963‑M2/119‑92 (MQ=255)                                                                                                                          tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgt                                                               >  1:372564‑M2/1‑28 (MQ=255)                                                                                                                          tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgt                                                               <  2:372564‑M2/112‑85 (MQ=255)                                                                                                                              tctgcaGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCgg                                             >  2:969594/6‑126 (MQ=255)                                                                                                                              tctgcaGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCgg                                             <  1:969594/121‑1 (MQ=255)                                                                                                                                gCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCTAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGt                   <  1:1186724/150‑1 (MQ=255)                                                                                                                                      gCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtg             >  2:754938/1‑150 (MQ=255)                                                                                                                                      gCTACCAGGCCCTGCAGACCTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCTATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtg             >  2:1122803/1‑150 (MQ=255)                                                                                                                                          tcAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggcaa         >  2:826806/2‑150 (MQ=255)                                                                                                                                           cAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggcaat        >  2:689194/1‑150 (MQ=255)                                                                                                                                            aGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGTAATGACATCCTGTCGGGtggcaatg       <  1:32709/150‑1 (MQ=255)                                                                                                                                            aGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggcaatg       <  2:550975/150‑1 (MQ=255)                                                                                                                                                ccTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGtggcaatggcaa   <  2:683733/150‑1 (MQ=255)                                                                                                                                                 cTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACCCCGAGTTCGATATCTCCGGTGCAAAGGACGGCCATGACATCCTGTCGGGTggcaatggccat  <  2:350974/150‑1 (MQ=255)                                                                                                                                                 cTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGTggcaatggtaat  <  2:1133832/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCTGTCGGGTGGCAATGGCAAT  >  NC_002947/219794‑220087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.