New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 219919	47 (1.040)	6 (0.140)	5/240	NT	11.0%	coding (25425/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	= 219942	52 (1.190)					coding (25448/26049 nt)	PP_0168	putative surface adhesion protein

GGCAAGCCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCT  >  NC_002947/219770‑220068                                                                                                                                                      |                                                                                                                                                      ggCAAGCCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTC                                                                                                                                                       >  1:450738‑M1/1‑150 (MQ=255)       ccACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAg                                                                                                                                                 <  1:1022242/150‑1 (MQ=255)               cAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCa                                                                                                                                         >  1:823870/1‑150 (MQ=255)                         ccGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAg                                                                                                                               <  1:43216‑M2/150‑2 (MQ=255)                                 tttGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGacgtacgt                                                                                                                       <  1:240800/150‑1 (MQ=255)                                  ttGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCACTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGtt                                                                                                                      <  2:61278/150‑1 (MQ=255)                                      ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGcac                                                                                                                  >  2:684327/1‑150 (MQ=255)                                      ccAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGcac                                                                                                                  >  2:205062/1‑150 (MQ=255)                                          ggCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGCCACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACagaa                                                                                                              <  2:823870/150‑1 (MQ=255)                                             gATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATATTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAagag                                                                                                           >  1:683733/1‑150 (MQ=255)                                                 ctcGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGgt                                                                                                       <  1:135805/150‑1 (MQ=255)                                                     gTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGtt                                                                                                                      >  2:785580/1‑131 (MQ=255)                                                     gTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGtt                                                                                                                      <  1:785580/131‑1 (MQ=255)                                                          tCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCTAGGGCTACCAGGCGCTGCAGACGTACGTTGGACAGAAGAGCGGTGTGGAAGTc                                                                                              >  2:968353/1‑150 (MQ=255)                                                            cGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacga                                                                                                                           <  2:461963‑M1/119‑29 (MQ=255)                                                            cGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacga                                                                                                                           >  1:461963‑M1/1‑91 (MQ=255)                                                                   aCGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacga                                                                                                                           <  2:372564‑M1/112‑29 (MQ=255)                                                                   aCGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacga                                                                                                                           >  1:372564‑M1/1‑84 (MQ=255)                                                                     ggTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTGAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCAc                                                                                   <  2:450738/150‑1 (MQ=255)                                                                     ggTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCAc                                                                                   >  2:313328/1‑150 (MQ=255)                                                                        gCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTAc                                                                                <  1:313328/150‑1 (MQ=255)                                                                        gCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGGCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTAc                                                                                <  1:684327/150‑1 (MQ=255)                                                                              ttccGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGGCCTGCAGACGTACGTTGCACAGAAGAGGGGTGTTGAAGTCGGTGGTGTGACTACAAGCaa                                                                          >  1:594659/3‑150 (MQ=255)                                                                                  gACACCATTGATAGTGGTAACGGCAACGGCATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCt                                                                                                                                   >  1:31294/1‑89 (MQ=255)                                                                                  gACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCt                                                                                                                                   <  2:31294/89‑1 (MQ=255)                                                                                        aTTGATAGTGGTAACGGCAACGACATCATCTTCGGTGCCCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgccgaca                                                                                                                         >  1:359658‑M1/1‑63 (MQ=255)                                                                                        aTTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCtgcagggcctggtagccctcgctgacgaca                                                                                                                         <  2:359658‑M1/93‑31 (MQ=255)                                                                                           gATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTAc                                                             <  1:1162268/150‑1 (MQ=255)                                                                                                tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGtt                                                                                                    <  2:1023460/106‑1 (MQ=255)                                                                                                tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGtt                                                                                                    >  1:1023460/1‑106 (MQ=255)                                                                                                tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTc                                                                                     <  1:56244/121‑1 (MQ=255)                                                                                                tGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTc                                                                                     >  2:56244/1‑121 (MQ=255)                                                                                                  gTAACGGCAACGACATCATCTTCGGTGACCGGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTACAGACGTACGTTGCACAGAAGAGCGGAGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCAGCAGTACATCACCg                                                      >  2:246719/1‑150 (MQ=255)                                                                                                   tgaCGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGa                                                     >  1:645285/3‑150 (MQ=255)                                                                                                   tAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGa                                                     >  1:619437/1‑150 (MQ=255)                                                                                                    aaCGGCAACGACATCATCTTCGGTGACCTGATCAGAAGCTCCGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAg                                                    <  1:968353/150‑1 (MQ=255)                                                                                                    aaCGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAg                                                    >  2:307797/1‑150 (MQ=255)                                                                                                      cGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTa                                                              <  1:1173/138‑1 (MQ=255)                                                                                                      cGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTa                                                              >  2:1173/1‑138 (MQ=255)                                                                                                        gCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACt                                                >  1:350974/1‑150 (MQ=255)                                                                                                                 tcatcTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGt                                       >  1:1084543/1‑150 (MQ=255)                                                                                                                   atcTTCGGTGACCTGATCACCCTCCACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAACCGCGGTGTTGAAGTCGGTGCTGTGGCTACCAGGAAGGTGGACCAGTACATCACCGAGCACTACACCGAGTTc                                     <  1:511200/150‑1 (MQ=255)                                                                                                                   atcTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTc                                     <  1:307797/150‑1 (MQ=255)                                                                                                                      ttCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGat                                  <  2:148658/150‑1 (MQ=255)                                                                                                                          gTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATAtct                              >  1:1133832/1‑150 (MQ=255)                                                                                                                            gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTc                                                                                              >  1:1080436/1‑84 (MQ=255)                                                                                                                            gACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTc                                                                                              <  2:1080436/84‑1 (MQ=255)                                                                                                                             aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCa                                                                              >  2:1116112/1‑99 (MQ=255)                                                                                                                             aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCa                                                                              <  1:1116112/99‑1 (MQ=255)                                                                                                                             aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCg                           <  1:205062/150‑1 (MQ=255)                                                                                                                             aCCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCg                           >  1:550975/1‑150 (MQ=255)                                                                                                                               cTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACTATTATTGTTGATCCGTACACCACCGAGATCTACACCGAGTTCGATATCTCCGGt                         <  2:43216/150‑1 (MQ=255)                                                                                                                                        cTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGAc                <  2:619437/150‑1 (MQ=255)                                                                                                                                          cAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACgg              <  1:299301/150‑1 (MQ=255)                                                                                                                                              ggTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAAt          <  1:453072/150‑1 (MQ=255)                                                                                                                                                tgtCGTCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaat                                                                 <  2:359658‑M2/93‑64 (MQ=255)                                                                                                                                                tgtCGGCAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcagggcaccgaagatgatgtcgttgccgttaccactatcaat                                                                 >  1:359658‑M2/1‑30 (MQ=255)                                                                                                                                                  tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcg                                     <  2:461963‑M2/119‑92 (MQ=255)                                                                                                                                                  tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcg                                     >  1:461963‑M2/1‑28 (MQ=255)                                                                                                                                                  tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgt                                            >  1:372564‑M2/1‑28 (MQ=255)                                                                                                                                                  tcgtcAGCGAGGGCTACCAGGCCCTGCAgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgt                                            <  2:372564‑M2/112‑85 (MQ=255)                                                                                                                                                      ctgcagggcctggtagccctcgctgacgacaccgttgagggtgatcaggtcaccgaagatgatgtcgttgccgttaccactatcaatggtgtcggcacctggcaccgttgcttcggagtgaccgagaatcgccttggccaaatcggacgg  <  1:43216‑M1/150‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                      GGCAAGCCACAGACCAATATCGACCCGTCCGATTTGGCCAAGGCGATTCTCGGTCACTCCGAAGCAACGGTGCCAGGTGCCGACACCATTGATAGTGGTAACGGCAACGACATCATCTTCGGTGACCTGATCACCCTCAACGGTGTCGTCAGCGAGGGCTACCAGGCCCTGCAGACGTACGTTGCACAGAAGAGCGGTGTTGAAGTCGGTGCTGTCACTACCAGCAATGTTCACCAGTACATCACCGAGCACTACACCGAGTTCGATATCTCCGGTGCCAAGGACGGCAATGACATCCT  >  NC_002947/219770‑220068

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.